Variant report

Variant	rs2289508
Chromosome Location	chr3:100149154-100149155
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:100120209..100121880-chr3:100147811..100150727,2	K562	blood:
2	chr3:100131475..100134167-chr3:100148948..100151387,2	K562	blood:
3	chr3:100116980..100119109-chr3:100147635..100150466,2	K562	blood:
4	chr3:100137424..100139459-chr3:100146815..100149472,2	K562	blood:

Variant related genes	Relation type
ENSG00000206535	Chromatin interaction
ENSG00000154174	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10049208	0.86[EUR][1000 genomes]
rs10222473	0.86[EUR][1000 genomes]
rs13318574	0.86[EUR][1000 genomes]
rs13326259	0.86[EUR][1000 genomes]
rs2304806	0.85[CHB][hapmap];0.82[CHD][hapmap]
rs28631346	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28655373	0.86[EUR][1000 genomes]
rs56132438	0.97[ASN][1000 genomes]
rs72943232	0.84[ASN][1000 genomes]
rs72943233	0.84[ASN][1000 genomes]
rs73860636	0.86[EUR][1000 genomes]
rs7433331	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7637142	0.86[EUR][1000 genomes]
rs9653957	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9809742	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs9817778	1.00[CEU][hapmap]
rs9844356	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs9855368	0.86[EUR][1000 genomes]
rs9864923	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9867520	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs9867888	1.00[CEU][hapmap]
rs9871870	0.86[EUR][1000 genomes]
rs9872028	0.86[EUR][1000 genomes]
rs9876856	1.00[CEU][hapmap];0.86[EUR][1000 genomes]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100122600-100149200	Weak transcription	Left Ventricle	heart
2	chr3:100130600-100162800	Weak transcription	Fetal Brain Male	brain
3	chr3:100132200-100151600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:100132800-100157800	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr3:100144000-100151800	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr3:100144200-100175600	Weak transcription	Psoas Muscle	Psoas
7	chr3:100145200-100156800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr3:100145200-100162400	Weak transcription	HepG2	liver
9	chr3:100145400-100149200	Weak transcription	Adipose Nuclei	Adipose
10	chr3:100146200-100149200	Weak transcription	Liver	Liver
11	chr3:100146400-100156800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr3:100146400-100163200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr3:100146400-100177800	Weak transcription	Ovary	ovary
14	chr3:100147000-100157200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr3:100147200-100149400	Weak transcription	Fetal Muscle Trunk	muscle
16	chr3:100148000-100149400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr3:100148000-100149400	Enhancers	Fetal Heart	heart
18	chr3:100148000-100149600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr3:100148000-100149600	Enhancers	HSMMtube	muscle
20	chr3:100148200-100149400	Active TSS	Aorta	Aorta
21	chr3:100148200-100182400	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr3:100148400-100150600	Weak transcription	Fetal Muscle Leg	muscle
23	chr3:100148800-100149200	Active TSS	Right Atrium	heart
24	chr3:100148800-100149400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr3:100149000-100149400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr3:100149000-100149400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr3:100149000-100149400	Flanking Active TSS	Fetal Lung	lung
28	chr3:100149000-100154400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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