Variant report

Variant	rs16842455
Chromosome Location	chr3:100356385-100356386
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:100355413..100357441-chr3:100427541..100429664,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TMEM45A-1	chr3:100356146-100356419	NONHSAT090874

Variant related genes	Relation type
ENSG00000114354	Chromatin interaction

Extended variants
information (count: 224 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:134)

rs_ID	r²[population]
rs1027703	0.91[EUR][1000 genomes]
rs10451876	0.83[AFR][1000 genomes]
rs1319005	0.91[EUR][1000 genomes]
rs13315123	0.91[EUR][1000 genomes]
rs13316513	0.91[EUR][1000 genomes]
rs13317522	0.91[EUR][1000 genomes]
rs13317752	0.91[EUR][1000 genomes]
rs13318793	0.91[EUR][1000 genomes]
rs13319530	0.91[EUR][1000 genomes]
rs13325014	0.91[EUR][1000 genomes]
rs13326828	0.91[EUR][1000 genomes]
rs13327329	0.91[EUR][1000 genomes]
rs13433681	0.91[EUR][1000 genomes]
rs13433684	0.91[EUR][1000 genomes]
rs13434023	0.91[EUR][1000 genomes]
rs16842435	0.83[AFR][1000 genomes]
rs16842436	0.83[AFR][1000 genomes]
rs16842441	0.88[AFR][1000 genomes]
rs16842458	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16842471	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16842472	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16842476	0.94[AFR][1000 genomes]
rs16842478	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16842679	0.91[EUR][1000 genomes]
rs16842705	0.91[EUR][1000 genomes]
rs16847405	0.91[EUR][1000 genomes]
rs2128225	0.91[EUR][1000 genomes]
rs2128226	0.91[EUR][1000 genomes]
rs28377730	0.81[EUR][1000 genomes]
rs28380383	0.91[EUR][1000 genomes]
rs28469597	0.91[EUR][1000 genomes]
rs28523825	0.91[EUR][1000 genomes]
rs28530760	0.91[EUR][1000 genomes]
rs35606932	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs35648279	0.91[EUR][1000 genomes]
rs41272969	1.00[EUR][1000 genomes]
rs41272973	1.00[EUR][1000 genomes]
rs41272977	1.00[EUR][1000 genomes]
rs41272979	0.91[EUR][1000 genomes]
rs41272989	1.00[EUR][1000 genomes]
rs41273547	1.00[EUR][1000 genomes]
rs4317136	0.91[EUR][1000 genomes]
rs55865709	1.00[EUR][1000 genomes]
rs56254963	1.00[EUR][1000 genomes]
rs56384617	1.00[EUR][1000 genomes]
rs57687306	0.91[EUR][1000 genomes]
rs57808154	1.00[EUR][1000 genomes]
rs58073790	1.00[EUR][1000 genomes]
rs58121738	0.91[EUR][1000 genomes]
rs59374249	1.00[EUR][1000 genomes]
rs60359060	1.00[EUR][1000 genomes]
rs72914677	0.81[EUR][1000 genomes]
rs72919417	1.00[EUR][1000 genomes]
rs72919423	0.91[EUR][1000 genomes]
rs72919426	0.91[EUR][1000 genomes]
rs72919433	0.91[EUR][1000 genomes]
rs72928626	0.91[EUR][1000 genomes]
rs72928632	0.91[EUR][1000 genomes]
rs72928634	0.91[EUR][1000 genomes]
rs72928662	0.91[EUR][1000 genomes]
rs72928677	0.91[EUR][1000 genomes]
rs72928680	0.91[EUR][1000 genomes]
rs72928697	0.91[EUR][1000 genomes]
rs72928698	0.91[EUR][1000 genomes]
rs72929000	0.91[EUR][1000 genomes]
rs72929300	0.81[EUR][1000 genomes]
rs72930614	0.91[EUR][1000 genomes]
rs72930617	0.91[EUR][1000 genomes]
rs72930658	1.00[EUR][1000 genomes]
rs72930661	1.00[EUR][1000 genomes]
rs72930666	1.00[EUR][1000 genomes]
rs72930669	1.00[EUR][1000 genomes]
rs72930671	1.00[EUR][1000 genomes]
rs72930673	1.00[EUR][1000 genomes]
rs72930674	1.00[EUR][1000 genomes]
rs72930679	1.00[EUR][1000 genomes]
rs72930713	0.91[EUR][1000 genomes]
rs72930716	0.91[EUR][1000 genomes]
rs72930730	0.91[EUR][1000 genomes]
rs73143119	0.81[EUR][1000 genomes]
rs7628074	1.00[EUR][1000 genomes]
rs7628965	1.00[EUR][1000 genomes]
rs7637207	1.00[EUR][1000 genomes]
rs7647983	1.00[EUR][1000 genomes]
rs9290170	0.91[EUR][1000 genomes]
rs9290213	0.91[EUR][1000 genomes]
rs9631470	0.91[EUR][1000 genomes]
rs967308	0.91[EUR][1000 genomes]
rs967309	0.91[EUR][1000 genomes]
rs9811997	0.91[EUR][1000 genomes]
rs9813673	0.91[EUR][1000 genomes]
rs9813730	0.91[EUR][1000 genomes]
rs9817424	0.91[EUR][1000 genomes]
rs9817663	0.81[EUR][1000 genomes]
rs9818055	0.91[EUR][1000 genomes]
rs9818126	0.91[EUR][1000 genomes]
rs9823506	0.91[EUR][1000 genomes]
rs9824297	0.91[EUR][1000 genomes]
rs9825075	0.91[EUR][1000 genomes]
rs9826446	0.91[EUR][1000 genomes]
rs9830610	0.81[EUR][1000 genomes]
rs9832907	0.91[EUR][1000 genomes]
rs9833043	0.91[EUR][1000 genomes]
rs9833524	0.91[EUR][1000 genomes]
rs9834987	0.91[EUR][1000 genomes]
rs9839133	0.91[EUR][1000 genomes]
rs9840416	0.91[EUR][1000 genomes]
rs9842040	0.91[EUR][1000 genomes]
rs9851573	0.91[EUR][1000 genomes]
rs9853377	0.91[EUR][1000 genomes]
rs9853496	0.91[EUR][1000 genomes]
rs9853591	0.91[EUR][1000 genomes]
rs9853596	0.91[EUR][1000 genomes]
rs9856442	0.91[EUR][1000 genomes]
rs9856776	0.91[EUR][1000 genomes]
rs9859204	0.91[EUR][1000 genomes]
rs9859445	0.91[EUR][1000 genomes]
rs9859523	0.91[EUR][1000 genomes]
rs9859730	0.91[EUR][1000 genomes]
rs9861416	0.91[EUR][1000 genomes]
rs9864113	0.91[EUR][1000 genomes]
rs9866866	0.91[EUR][1000 genomes]
rs9870028	0.91[EUR][1000 genomes]
rs9871767	0.91[EUR][1000 genomes]
rs9873252	0.81[EUR][1000 genomes]
rs9876678	0.91[EUR][1000 genomes]
rs9877317	1.00[EUR][1000 genomes]
rs9877865	0.91[EUR][1000 genomes]
rs9878155	0.91[EUR][1000 genomes]
rs9879396	0.83[EUR][1000 genomes]
rs9881780	0.91[EUR][1000 genomes]
rs9881943	0.91[EUR][1000 genomes]
rs9882151	0.81[EUR][1000 genomes]
rs9883418	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:90 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751965	chr3:100299310-100462527	Enhancers Genic enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	esv2751966	chr3:100299310-100468500	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	esv2756284	chr3:100299329-100427937	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv2752830	chr3:100299329-100442478	Enhancers Flanking Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv432464	chr3:100299329-100442478	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	esv2751967	chr3:100299329-100455139	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	esv2751968	chr3:100299329-100476713	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
8	nsv432466	chr3:100299329-100476713	Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
9	nsv536667	chr3:100308355-100445857	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
10	nsv460770	chr3:100310812-100433592	Genic enhancers Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
11	nsv591150	chr3:100310812-100433592	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
12	esv2751969	chr3:100312499-100479384	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
13	esv2763708	chr3:100317928-100442509	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
14	nsv591151	chr3:100322043-100433592	Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
15	nsv1006559	chr3:100324275-100427937	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
16	nsv877219	chr3:100324442-100400733	Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
17	nsv516418	chr3:100324442-100433592	Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
18	nsv460771	chr3:100324442-100433592	Active TSS Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
19	nsv591152	chr3:100324442-100433592	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
20	nsv877220	chr3:100324442-100467018	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
21	nsv1007742	chr3:100326173-100441716	Flanking Active TSS Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
22	nsv1014117	chr3:100326173-100442478	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
23	nsv591153	chr3:100335088-100437892	Enhancers Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
24	nsv591154	chr3:100335088-100439278	Strong transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
25	nsv591155	chr3:100335088-100444854	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
26	nsv591156	chr3:100335088-100451133	Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
27	nsv591157	chr3:100335088-100455139	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
28	nsv869920	chr3:100336028-100437968	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
29	nsv1008743	chr3:100340056-100419735	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
30	nsv1004887	chr3:100340056-100420251	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
31	nsv1005369	chr3:100340056-100421065	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
32	nsv1009705	chr3:100340056-100423589	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
33	nsv1006045	chr3:100340056-100427937	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
34	nsv1002624	chr3:100340056-100441716	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
35	nsv1006373	chr3:100340056-100442386	Weak transcription Genic enhancers Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
36	nsv1006303	chr3:100340056-100442478	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
37	nsv1006402	chr3:100340056-100446966	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
38	nsv999432	chr3:100340056-100448183	Genic enhancers Strong transcription Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
39	nsv1013021	chr3:100340535-100427937	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
40	nsv1008949	chr3:100342190-100442478	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
41	nsv1007437	chr3:100342190-100448183	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
42	nsv432467	chr3:100342310-100442310	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
43	esv2751970	chr3:100342310-100442478	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
44	nsv432468	chr3:100342310-100442478	Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
45	esv2751971	chr3:100342493-100468500	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
46	esv2751972	chr3:100342493-100493062	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
47	nsv432469	chr3:100342493-100493062	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
48	nsv591158	chr3:100345201-100410724	Enhancers Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
49	nsv591159	chr3:100346146-100444854	Genic enhancers Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
50	nsv1002525	chr3:100350244-100421065	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100354000-100357800	Weak transcription	Fetal Brain Male	brain
2	chr3:100354400-100356800	Weak transcription	Pancreas	Pancrea
3	chr3:100354400-100359000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr3:100354400-100360000	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr3:100354600-100359600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr3:100354800-100357600	Genic enhancers	Fetal Intestine Small	intestine
7	chr3:100355000-100359800	Weak transcription	Small Intestine	intestine
8	chr3:100355200-100357000	Strong transcription	Primary neutrophils fromperipheralblood	blood
9	chr3:100355200-100359000	Weak transcription	HepG2	liver
10	chr3:100355600-100357600	Strong transcription	Duodenum Mucosa	Duodenum
11	chr3:100355800-100356400	Flanking Active TSS	Liver	Liver
12	chr3:100355800-100356600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr3:100356000-100356600	Bivalent Enhancer	NHDF-Ad	bronchial
14	chr3:100356200-100356600	Bivalent Enhancer	Osteobl	bone
15	chr3:100356200-100359200	Genic enhancers	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links