Variant report

Variant	rs72943302
Chromosome Location	chr3:100236732-100236733
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10049208	0.86[EUR][1000 genomes]
rs10222473	0.86[EUR][1000 genomes]
rs13318574	0.86[EUR][1000 genomes]
rs13326259	0.86[EUR][1000 genomes]
rs28655373	0.86[EUR][1000 genomes]
rs72945203	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72945208	0.84[AFR][1000 genomes]
rs73860636	0.86[EUR][1000 genomes]
rs7637142	0.86[EUR][1000 genomes]
rs9809742	0.86[EUR][1000 genomes]
rs9839721	0.81[AFR][1000 genomes]
rs9844356	0.86[EUR][1000 genomes]
rs9855368	0.86[EUR][1000 genomes]
rs9867520	0.86[EUR][1000 genomes]
rs9871870	0.86[EUR][1000 genomes]
rs9872028	0.86[EUR][1000 genomes]
rs9876856	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877218	chr3:100176360-100267619	Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100225400-100236800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr3:100227200-100239400	Weak transcription	Ovary	ovary
3	chr3:100227400-100239400	Weak transcription	Aorta	Aorta
4	chr3:100227400-100239400	Weak transcription	Fetal Stomach	stomach
5	chr3:100235000-100237400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr3:100235000-100238000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr3:100235200-100238400	Enhancers	NHDF-Ad	bronchial
8	chr3:100235200-100242000	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr3:100235400-100237800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr3:100235600-100237400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr3:100235600-100237800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr3:100235800-100237600	Weak transcription	Osteobl	bone
13	chr3:100235800-100244800	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr3:100236000-100237400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr3:100236200-100238600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr3:100236400-100242600	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr3:100236600-100236800	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr3:100236600-100238200	Weak transcription	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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