Variant report

Variant	rs9845107
Chromosome Location	chr3:17874068-17874069
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs9865647	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999594	chr3:17690416-17982318	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17872000-17874200	Enhancers	Muscle Satellite Cultured Cells	--
2	chr3:17872000-17874200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr3:17872400-17874200	Enhancers	HMEC	breast
4	chr3:17872600-17874200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr3:17873000-17874800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr3:17873000-17882600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr3:17873400-17875000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr3:17873800-17875000	Weak transcription	NHEK	skin
9	chr3:17874000-17875000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr3:17874000-17878200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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