Variant report

Variant	rs9865647
Chromosome Location	chr3:17677821-17677822
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:17677327..17679225-chr3:17680575..17682681,2	K562	blood:
2	chr3:17675340..17678330-chr3:17685687..17687246,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs13320533	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13327620	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9810063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9845107	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999460	chr3:17360261-17720103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv536510	chr3:17360261-17720103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1013069	chr3:17560456-17783372	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv1849856	chr3:17646794-17748688	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv1828838	chr3:17646794-17757960	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17650800-17681200	Weak transcription	Aorta	Aorta
2	chr3:17656000-17681200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr3:17657800-17681200	Weak transcription	Colon Smooth Muscle	Colon
4	chr3:17660400-17679800	Weak transcription	Adipose Nuclei	Adipose
5	chr3:17664000-17679000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr3:17664800-17688600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr3:17664800-17689000	Weak transcription	Primary B cells from peripheral blood	blood
8	chr3:17668600-17679400	Weak transcription	GM12878-XiMat	blood
9	chr3:17668600-17679600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr3:17668800-17706200	Weak transcription	Primary B cells from cord blood	blood
11	chr3:17673400-17680400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr3:17673400-17681200	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr3:17674000-17690800	Weak transcription	Primary hematopoietic stem cells	blood
14	chr3:17674200-17681000	Weak transcription	HSMMtube	muscle
15	chr3:17674200-17687600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr3:17674400-17679400	Weak transcription	NHLF	lung
17	chr3:17674400-17680800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr3:17674600-17679200	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr3:17674600-17679800	Weak transcription	NHEK	skin
20	chr3:17674800-17679200	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr3:17674800-17680000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr3:17675000-17679200	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr3:17676600-17678000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr3:17676600-17678000	Enhancers	Muscle Satellite Cultured Cells	--
25	chr3:17676600-17678000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr3:17676600-17678000	Enhancers	NHDF-Ad	bronchial
27	chr3:17677200-17679200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr3:17677200-17679800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr3:17677200-17680000	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr3:17677200-17681000	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr3:17677400-17678000	Enhancers	A549	lung
32	chr3:17677400-17678000	Enhancers	Hela-S3	cervix
33	chr3:17677400-17679400	Weak transcription	Osteobl	bone
34	chr3:17677400-17679600	Weak transcription	HSMM	muscle
35	chr3:17677400-17681000	Weak transcription	K562	blood
36	chr3:17677400-17681200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr3:17677600-17679200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr3:17677600-17681000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr3:17677600-17681200	Weak transcription	Left Ventricle	heart
40	chr3:17677600-17681200	Weak transcription	Right Atrium	heart
41	chr3:17677600-17686800	Weak transcription	Small Intestine	intestine
42	chr3:17677800-17679200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr3:17677800-17679800	Weak transcription	HUVEC	blood vessel
44	chr3:17677800-17680000	Weak transcription	NH-A	brain

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