Variant report

Variant	rs9845220
Chromosome Location	chr3:21940654-21940655
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:21939959..21942443-chr3:21956783..21959351,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs13315161	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13318103	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13321160	1.00[AMR][1000 genomes]
rs13324522	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13433695	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17009864	1.00[AMR][1000 genomes]
rs17009960	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9810048	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9812245	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9820193	1.00[AMR][1000 genomes]
rs9821529	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9822820	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9824844	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9826718	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9836616	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9843481	1.00[AMR][1000 genomes]
rs9843487	1.00[AMR][1000 genomes]
rs9843981	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9847713	1.00[AMR][1000 genomes]
rs9860705	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9862765	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9871392	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9880992	1.00[AMR][1000 genomes]
rs9881684	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534005	chr3:21387588-22003293	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv2751992	chr3:21786893-22212357	Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv948555	chr3:21786893-22212357	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv834632	chr3:21803941-21974082	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1003085	chr3:21887971-22415107	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv834633	chr3:21918264-22088338	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv876614	chr3:21919039-21994022	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
8	nsv998906	chr3:21921707-21962293	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
9	nsv1014821	chr3:21929218-21962293	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:21940600-21941200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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