Variant report

Variant	rs9846499
Chromosome Location	chr3:46589143-46589144
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:46582368..46586773-chr3:46586902..46591684,9	K562	blood:
2	chr3:46565864..46568111-chr3:46586366..46589191,2	K562	blood:
3	chr3:46582873..46586773-chr3:46587066..46590997,5	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs6810363	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9861962	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9883208	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013306	chr3:46469014-46698538	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv876737	chr3:46569721-46595431	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46544800-46599400	Weak transcription	Right Atrium	heart
2	chr3:46556400-46591000	Weak transcription	Psoas Muscle	Psoas
3	chr3:46558400-46591000	Weak transcription	Gastric	stomach
4	chr3:46578400-46599200	Weak transcription	HSMMtube	muscle
5	chr3:46581200-46599200	Weak transcription	Fetal Heart	heart
6	chr3:46581400-46594400	Enhancers	Fetal Thymus	thymus
7	chr3:46581600-46591000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr3:46581600-46599400	Weak transcription	Spleen	Spleen
9	chr3:46583200-46590600	Weak transcription	Primary hematopoietic stem cells	blood
10	chr3:46584400-46598000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr3:46584600-46591000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr3:46584600-46591200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr3:46584800-46590400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr3:46584800-46590800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr3:46584800-46592600	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr3:46584800-46594000	Weak transcription	NHDF-Ad	bronchial
17	chr3:46584800-46594400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr3:46585800-46589600	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr3:46586000-46589400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr3:46586600-46590000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr3:46586800-46590800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr3:46586800-46594800	Weak transcription	Liver	Liver
23	chr3:46587000-46590000	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr3:46587000-46590400	Enhancers	K562	blood
25	chr3:46587200-46598800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr3:46587600-46591000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr3:46587800-46590800	Weak transcription	Right Ventricle	heart
28	chr3:46587800-46597400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr3:46587800-46599600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr3:46588000-46589400	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr3:46588000-46590000	Enhancers	Dnd41	blood
32	chr3:46588000-46591000	Weak transcription	Ovary	ovary
33	chr3:46588400-46599600	Weak transcription	Rectal Smooth Muscle	rectum
34	chr3:46588600-46589400	Enhancers	Osteobl	bone
35	chr3:46588600-46591000	Weak transcription	Primary B cells from peripheral blood	blood
36	chr3:46588600-46591000	Weak transcription	Primary T cells from cord blood	blood
37	chr3:46588600-46591200	Weak transcription	GM12878-XiMat	blood
38	chr3:46588600-46592600	Weak transcription	Esophagus	oesophagus
39	chr3:46588800-46589400	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr3:46588800-46589800	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr3:46588800-46590000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr3:46588800-46590000	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr3:46588800-46590200	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr3:46588800-46591000	Weak transcription	Left Ventricle	heart
45	chr3:46589000-46590000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
46	chr3:46589000-46590200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr3:46589000-46590400	Weak transcription	Thymus	Thymus
48	chr3:46589000-46591000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links