Variant report

Variant	rs9851066
Chromosome Location	chr3:157218736-157218737
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TEAD4	chr3:157216926-157218902	ECC-1	luminal epithelium:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156870742..156872251-chr3:157218002..157219744,2	MCF-7	breast:

Variant related genes	Relation type
VEPH1	TF binding region
ENSG00000201778	Chromatin interaction
ENSG00000163660	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11709669	0.80[CHB][hapmap]
rs12631456	0.94[CEU][hapmap];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1378794	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1456102	0.86[CHB][hapmap]
rs17470517	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1824056	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1902347	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28690487	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4679798	0.94[CEU][hapmap];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4680370	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs57095742	0.84[EUR][1000 genomes]
rs7639175	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9815250	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9841781	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9859018	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9873474	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9877620	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757900	chr3:157090166-157254684	Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv2759193	chr3:157090166-157254684	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157213200-157221200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr3:157216600-157219800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:157217200-157219200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:157217200-157220000	Enhancers	HUVEC	blood vessel
5	chr3:157217400-157222200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr3:157217600-157218800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr3:157217600-157219400	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr3:157217800-157218800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr3:157217800-157219000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr3:157217800-157219000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr3:157217800-157219400	Enhancers	K562	blood
12	chr3:157217800-157221000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr3:157217800-157235400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr3:157218000-157220800	Weak transcription	Fetal Brain Female	brain
15	chr3:157218000-157220800	Weak transcription	HSMM	muscle
16	chr3:157218000-157221600	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr3:157218200-157218800	Enhancers	Rectal Mucosa Donor 31	rectum
18	chr3:157218200-157219000	Enhancers	Fetal Kidney	kidney
19	chr3:157218200-157219200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr3:157218200-157219200	Weak transcription	Brain Germinal Matrix	brain
21	chr3:157218200-157219400	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr3:157218200-157220000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr3:157218200-157220000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr3:157218200-157220000	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr3:157218200-157220600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr3:157218200-157220800	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr3:157218200-157220800	Weak transcription	HSMMtube	muscle
28	chr3:157218200-157221000	Weak transcription	Colonic Mucosa	Colon
29	chr3:157218200-157221000	Weak transcription	Pancreas	Pancrea
30	chr3:157218200-157221000	Weak transcription	NH-A	brain
31	chr3:157218200-157221600	Enhancers	iPS-20b Cell Line	embryonic stem cell
32	chr3:157218400-157219200	Enhancers	Hela-S3	cervix
33	chr3:157218400-157219400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr3:157218400-157219400	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr3:157218400-157220800	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr3:157218400-157220800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr3:157218400-157220800	Weak transcription	NHLF	lung
38	chr3:157218400-157221000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr3:157218400-157221000	Weak transcription	Osteobl	bone
40	chr3:157218600-157219200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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