Variant report

Variant	rs9851117
Chromosome Location	chr3:21584174-21584175
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:18)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:18 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr3:21583988-21584334	K562	blood:	n/a	n/a
2	POLR2A	chr3:21584015-21584506	NB4	blood:	n/a	n/a
3	TBP	chr3:21584106-21584628	K562	blood:	n/a	n/a
4	POLR2A	chr3:21584063-21584497	K562	blood:	n/a	n/a
5	PML	chr3:21584142-21584510	K562	blood:	n/a	n/a
6	POLR2A	chr3:21584002-21584668	K562	blood:	n/a	n/a
7	MYC	chr3:21583990-21584452	NB4	blood:	n/a	n/a
8	MAX	chr3:21584164-21584425	K562	blood:	n/a	n/a
9	GABPA	chr3:21583920-21584458	K562	blood:	n/a	n/a
10	MAX	chr3:21584123-21585963	NB4	blood:	n/a	n/a
11	POLR2A	chr3:21584103-21584332	K562	blood:	n/a	n/a
12	GABPA	chr3:21584107-21584379	K562	blood:	n/a	n/a
13	NR2F2	chr3:21584156-21584431	K562	blood:	n/a	n/a
14	POLR2A	chr3:21583996-21584957	K562	blood:	n/a	n/a
15	CBX3	chr3:21583994-21584381	K562	blood:	n/a	n/a
16	RCOR1	chr3:21584013-21584518	K562	blood:	n/a	n/a
17	HEY1	chr3:21584066-21584404	K562	blood:	n/a	n/a
18	ELF1	chr3:21584027-21584325	K562	blood:	n/a	n/a

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:21572284..21575106-chr3:21582629..21584216,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs13323807	0.86[ASN][1000 genomes]
rs3860579	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9310650	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006471	chr3:21385627-21596955	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv534005	chr3:21387588-22003293	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1010460	chr3:21516810-21839871	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:21561800-21587800	Weak transcription	Aorta	Aorta
2	chr3:21566600-21585400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr3:21574000-21602000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:21580800-21584200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr3:21582000-21584800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr3:21582400-21585600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr3:21584000-21584200	Flanking Active TSS	K562	blood
8	chr3:21584000-21586400	Active TSS	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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