Variant report

Variant	rs9851306
Chromosome Location	chr3:46143289-46143290
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:46143235..46146105-chr3:46147610..46149596,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1388602	0.81[ASN][1000 genomes]
rs1491953	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62243875	0.83[ASN][1000 genomes]
rs62243876	0.83[ASN][1000 genomes]
rs6772051	0.86[AFR][1000 genomes]
rs6808074	0.86[AFR][1000 genomes]
rs9819396	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9819419	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46129200-46147400	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr3:46129400-46154200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr3:46131400-46152200	Weak transcription	Pancreas	Pancrea
4	chr3:46139200-46150600	Weak transcription	Lung	lung
5	chr3:46140400-46143400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr3:46140400-46144000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr3:46140400-46144400	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr3:46140400-46146000	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr3:46140400-46149200	Weak transcription	NHLF	lung
10	chr3:46140400-46150000	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr3:46140600-46144000	Weak transcription	NHDF-Ad	bronchial
12	chr3:46140600-46144200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr3:46140600-46146200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr3:46140600-46150000	Weak transcription	Hela-S3	cervix
15	chr3:46140600-46150000	Weak transcription	HMEC	breast
16	chr3:46140800-46150000	Weak transcription	Duodenum Mucosa	Duodenum
17	chr3:46141000-46144000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr3:46141000-46146000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr3:46141000-46148800	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr3:46141000-46150200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr3:46141200-46144200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr3:46141200-46144400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr3:46141200-46145800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr3:46142000-46145200	Weak transcription	Dnd41	blood
25	chr3:46142200-46143800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr3:46142600-46143400	ZNF genes & repeats	GM12878-XiMat	blood
27	chr3:46142600-46143800	Weak transcription	Fetal Thymus	thymus
28	chr3:46142600-46144200	Weak transcription	Primary T cells fromperipheralblood	blood
29	chr3:46142600-46146000	Weak transcription	Primary B cells from peripheral blood	blood
30	chr3:46142800-46143400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
31	chr3:46142800-46147400	Enhancers	Primary neutrophils fromperipheralblood	blood
32	chr3:46143000-46145800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr3:46143200-46146200	Weak transcription	Primary B cells from cord blood	blood
34	chr3:46143200-46150600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links