Variant report

Variant	rs9819419
Chromosome Location	chr3:46137363-46137364
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10433607	0.82[ASN][1000 genomes]
rs13320534	0.82[ASN][1000 genomes]
rs1388602	0.86[ASN][1000 genomes]
rs1491953	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1491958	0.82[ASN][1000 genomes]
rs1546079	0.83[ASN][1000 genomes]
rs62243875	0.88[ASN][1000 genomes]
rs62243876	0.88[ASN][1000 genomes]
rs62243906	0.83[ASN][1000 genomes]
rs6807854	0.85[ASN][1000 genomes]
rs9819396	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9851306	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46127200-46138200	Weak transcription	Primary T cells from cord blood	blood
2	chr3:46129200-46147400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr3:46129400-46154200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr3:46129800-46140000	Enhancers	Fetal Thymus	thymus
5	chr3:46130200-46141200	Enhancers	Primary B cells from peripheral blood	blood
6	chr3:46130600-46143000	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr3:46131400-46137400	Weak transcription	Colonic Mucosa	Colon
8	chr3:46131400-46138000	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr3:46131400-46152200	Weak transcription	Pancreas	Pancrea
10	chr3:46132000-46139000	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr3:46132000-46139000	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr3:46132000-46140200	Enhancers	Primary hematopoietic stem cells	blood
13	chr3:46132200-46138000	Weak transcription	NHDF-Ad	bronchial
14	chr3:46132400-46138800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr3:46132400-46139000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr3:46132600-46137600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr3:46132600-46138000	Weak transcription	Adipose Nuclei	Adipose
18	chr3:46133200-46137400	Weak transcription	Placenta	Placenta
19	chr3:46133400-46137800	Weak transcription	Small Intestine	intestine
20	chr3:46134400-46137600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr3:46134800-46137400	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr3:46134800-46138400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr3:46134800-46138800	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr3:46135400-46137400	Weak transcription	Duodenum Mucosa	Duodenum
25	chr3:46135800-46137400	Weak transcription	Dnd41	blood
26	chr3:46136600-46137400	Enhancers	Monocytes-CD14+_RO01746	blood
27	chr3:46136600-46137600	Weak transcription	Spleen	Spleen
28	chr3:46136600-46138200	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr3:46136800-46143200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr3:46137000-46137800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
31	chr3:46137000-46139400	Enhancers	GM12878-XiMat	blood
32	chr3:46137000-46139600	Enhancers	Primary B cells from cord blood	blood
33	chr3:46137000-46139600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr3:46137200-46139800	Enhancers	Rectal Mucosa Donor 29	rectum

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