Variant report

Variant	rs10433607
Chromosome Location	chr3:46172708-46172709
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12054287	0.83[JPT][hapmap]
rs12107600	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13320534	1.00[CEU][hapmap];0.93[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.94[TSI][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1388602	0.91[ASN][1000 genomes]
rs1491953	0.85[ASN][1000 genomes]
rs1491958	0.85[ASN][1000 genomes]
rs1491960	0.81[CHB][hapmap];0.90[CHD][hapmap]
rs4490402	0.86[CHD][hapmap];0.83[YRI][hapmap]
rs61066315	0.80[ASN][1000 genomes]
rs62243875	0.93[ASN][1000 genomes]
rs62243876	0.93[ASN][1000 genomes]
rs62243906	0.95[ASN][1000 genomes]
rs62243907	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6807854	0.96[ASN][1000 genomes]
rs7623476	0.84[CHD][hapmap]
rs9819419	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10433607	CLEC3B	cis	parietal	SCAN

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46167000-46175600	Weak transcription	Fetal Lung	lung
2	chr3:46168800-46178200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr3:46169800-46173400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:46170000-46177200	Enhancers	Fetal Thymus	thymus
5	chr3:46170600-46172800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr3:46170800-46174200	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr3:46171000-46172800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr3:46171400-46172800	Enhancers	Placenta	Placenta
9	chr3:46171600-46175400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
10	chr3:46171800-46173000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr3:46171800-46173400	Weak transcription	Spleen	Spleen
12	chr3:46171800-46174000	Enhancers	Adipose Nuclei	Adipose
13	chr3:46172200-46172800	Flanking Active TSS	Primary B cells from cord blood	blood
14	chr3:46172200-46173400	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr3:46172200-46174800	Weak transcription	Fetal Muscle Leg	muscle
16	chr3:46172400-46172800	Flanking Active TSS	Primary hematopoietic stem cells	blood
17	chr3:46172600-46172800	Enhancers	Duodenum Mucosa	Duodenum
18	chr3:46172600-46173800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr3:46172600-46174000	Enhancers	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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