Variant report

Variant	rs6807854
Chromosome Location	chr3:46158026-46158027
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10433607	0.96[ASN][1000 genomes]
rs10510747	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1118021	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12054287	0.91[EUR][1000 genomes]
rs12107600	0.83[ASN][1000 genomes]
rs12486449	0.85[EUR][1000 genomes]
rs13320534	0.96[ASN][1000 genomes]
rs13434141	0.86[EUR][1000 genomes]
rs1388602	0.95[ASN][1000 genomes]
rs1491953	0.89[ASN][1000 genomes]
rs1491958	0.87[ASN][1000 genomes]
rs1491960	0.85[EUR][1000 genomes]
rs1602580	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17078567	0.85[EUR][1000 genomes]
rs17078589	0.81[ASN][1000 genomes]
rs2036295	0.83[EUR][1000 genomes]
rs2133662	0.84[EUR][1000 genomes]
rs2173639	0.84[EUR][1000 genomes]
rs4447807	0.91[EUR][1000 genomes]
rs4490402	0.86[EUR][1000 genomes]
rs4682804	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4682805	0.80[ASN][1000 genomes]
rs4682807	0.81[ASN][1000 genomes]
rs4683169	0.82[EUR][1000 genomes]
rs4683174	0.86[EUR][1000 genomes]
rs56800498	0.82[EUR][1000 genomes]
rs60991632	0.82[EUR][1000 genomes]
rs61066315	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61254379	0.82[EUR][1000 genomes]
rs62242832	0.91[EUR][1000 genomes]
rs62242846	0.82[EUR][1000 genomes]
rs62243869	0.86[EUR][1000 genomes]
rs62243873	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62243875	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62243876	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62243906	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62243907	0.81[ASN][1000 genomes]
rs6763341	0.84[EUR][1000 genomes]
rs751625	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7629999	0.81[EUR][1000 genomes]
rs7641151	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7641164	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7643426	0.84[EUR][1000 genomes]
rs9818635	0.80[EUR][1000 genomes]
rs9819419	0.85[ASN][1000 genomes]
rs9849715	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9856805	0.81[ASN][1000 genomes]
rs9990060	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46146800-46164400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:46148400-46160200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr3:46149200-46158800	Enhancers	NHLF	lung
4	chr3:46149200-46159800	Enhancers	Placenta	Placenta
5	chr3:46150400-46158800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:46150600-46158600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr3:46151000-46158800	Weak transcription	Stomach Mucosa	stomach
8	chr3:46151800-46158200	Enhancers	NHDF-Ad	bronchial
9	chr3:46152600-46165200	Weak transcription	Spleen	Spleen
10	chr3:46152800-46158800	Enhancers	Hela-S3	cervix
11	chr3:46152800-46159400	Weak transcription	Lung	lung
12	chr3:46152800-46162400	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr3:46156000-46159000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr3:46156400-46158400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr3:46156400-46159600	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr3:46156800-46158200	Weak transcription	Adipose Nuclei	Adipose
17	chr3:46156800-46158400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr3:46156800-46168000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr3:46157000-46159400	Enhancers	Primary neutrophils fromperipheralblood	blood
20	chr3:46157200-46159400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr3:46157200-46166600	Weak transcription	Psoas Muscle	Psoas
22	chr3:46157200-46168600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr3:46157400-46159800	Enhancers	Monocytes-CD14+_RO01746	blood
24	chr3:46157800-46158200	Enhancers	Fetal Lung	lung
25	chr3:46157800-46158800	Enhancers	NHEK	skin
26	chr3:46158000-46158800	Enhancers	HMEC	breast
27	chr3:46158000-46163200	Weak transcription	Fetal Stomach	stomach

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