Variant report

Variant	rs17078567
Chromosome Location	chr3:46108389-46108390
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:46106956..46110561-chr3:46110945..46113902,3	K562	blood:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10510747	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1118021	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12054287	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs12486449	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13434141	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1491960	1.00[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1546079	0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs1602580	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1604068	0.95[ASN][1000 genomes]
rs17078589	0.93[ASN][1000 genomes]
rs2036295	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2173639	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2888512	0.91[ASN][1000 genomes]
rs3796376	0.89[CEU][hapmap]
rs4339141	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4447807	0.86[EUR][1000 genomes]
rs4490402	1.00[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4586860	0.91[ASN][1000 genomes]
rs4682804	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4682805	0.92[ASN][1000 genomes]
rs4682807	0.92[ASN][1000 genomes]
rs4683169	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4683174	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56800498	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58035200	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58260031	0.89[EUR][1000 genomes]
rs59865404	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60539039	0.88[EUR][1000 genomes]
rs60991632	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61066315	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61254379	0.94[EUR][1000 genomes]
rs61387489	0.90[ASN][1000 genomes]
rs62242832	0.86[EUR][1000 genomes]
rs62242846	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62243869	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62243873	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62243875	0.86[EUR][1000 genomes]
rs62243876	0.86[EUR][1000 genomes]
rs62243906	0.83[EUR][1000 genomes]
rs6778958	0.91[ASN][1000 genomes]
rs6807854	0.85[EUR][1000 genomes]
rs751625	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7623476	0.95[CEU][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7641151	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7641164	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7643426	0.84[CEU][hapmap]
rs880160	0.91[ASN][1000 genomes]
rs9818635	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9849715	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9856805	0.92[ASN][1000 genomes]
rs9990060	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	esv2756987	chr3:46016464-46120400	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv2759145	chr3:46016464-46120400	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv1805205	chr3:46032847-46111081	Flanking Active TSS Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46103400-46113600	Enhancers	Primary T helper cells PMA-I stimulated	--
2	chr3:46103800-46113200	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr3:46103800-46114200	Enhancers	Primary T helper naive cells from peripheral blood	blood
4	chr3:46104000-46113400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr3:46104200-46108400	Enhancers	Fetal Thymus	thymus
6	chr3:46104200-46110000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr3:46104200-46110200	Enhancers	Primary T cells fromperipheralblood	blood
8	chr3:46104200-46113600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr3:46104400-46111800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr3:46104600-46114000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr3:46104800-46109200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr3:46105000-46108600	Weak transcription	Spleen	Spleen
13	chr3:46105000-46109800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr3:46105200-46108600	Weak transcription	Aorta	Aorta
15	chr3:46105200-46111000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
16	chr3:46105400-46111000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr3:46106400-46111200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr3:46107000-46109800	Enhancers	Psoas Muscle	Psoas
19	chr3:46107200-46109400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr3:46107400-46108800	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr3:46107400-46113800	Enhancers	Primary T cells from cord blood	blood
22	chr3:46107600-46108600	Weak transcription	Left Ventricle	heart
23	chr3:46107600-46108600	Weak transcription	Right Atrium	heart
24	chr3:46107600-46108600	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr3:46107600-46109000	Weak transcription	Adipose Nuclei	Adipose
26	chr3:46107600-46109000	Weak transcription	Fetal Heart	heart
27	chr3:46107600-46109000	Weak transcription	Placenta	Placenta
28	chr3:46107600-46109600	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr3:46107600-46112200	Weak transcription	GM12878-XiMat	blood
30	chr3:46107600-46112800	Enhancers	Dnd41	blood
31	chr3:46107600-46114200	Enhancers	Primary T killer memory cells from peripheral blood	blood
32	chr3:46107800-46108800	Weak transcription	Right Ventricle	heart
33	chr3:46107800-46109600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr3:46108200-46109400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr3:46108200-46112000	Weak transcription	Monocytes-CD14+_RO01746	blood

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