Variant report

Variant	rs751625
Chromosome Location	chr3:46128080-46128081
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:46126220..46128716-chr3:46205313..46206814,2	MCF-7	breast:
2	chr3:46127005..46128993-chr3:46132615..46135304,2	K562	blood:
3	chr3:46123578..46126069-chr3:46127195..46129826,3	K562	blood:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10510747	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1118021	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12054287	0.89[CEU][hapmap];0.81[CHB][hapmap];0.83[EUR][1000 genomes]
rs12485978	0.82[CHD][hapmap];0.81[JPT][hapmap];0.91[LWK][hapmap];0.84[MEX][hapmap];0.86[MKK][hapmap]
rs12486449	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13320534	0.87[CHB][hapmap];0.86[CHD][hapmap]
rs13434141	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1388602	0.83[ASN][1000 genomes]
rs1491959	0.80[CHD][hapmap];0.81[JPT][hapmap]
rs1491960	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.95[TSI][hapmap];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1546077	0.80[CHD][hapmap];0.81[JPT][hapmap]
rs1546079	0.94[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs1602580	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1604068	0.89[ASN][1000 genomes]
rs17078567	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17078589	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2036295	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2173639	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2888512	0.98[ASN][1000 genomes]
rs3796376	0.89[CEU][hapmap]
rs4339141	0.82[EUR][1000 genomes]
rs4447807	0.83[EUR][1000 genomes]
rs4490402	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.88[MEX][hapmap];0.97[TSI][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4586860	0.98[ASN][1000 genomes]
rs4682804	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4682805	0.99[ASN][1000 genomes]
rs4682807	0.99[ASN][1000 genomes]
rs4682810	0.80[CHD][hapmap];0.81[JPT][hapmap]
rs4683169	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4683174	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56800498	0.90[EUR][1000 genomes]
rs58035200	0.85[EUR][1000 genomes]
rs58260031	0.86[EUR][1000 genomes]
rs59865404	0.90[EUR][1000 genomes]
rs60539039	0.85[EUR][1000 genomes]
rs60991632	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61066315	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61254379	0.91[EUR][1000 genomes]
rs61387489	0.97[ASN][1000 genomes]
rs62242832	0.83[EUR][1000 genomes]
rs62242846	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62243869	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62243873	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62243875	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62243876	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62243906	0.86[EUR][1000 genomes]
rs6778958	0.98[ASN][1000 genomes]
rs6795629	0.81[JPT][hapmap]
rs6807854	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7623476	0.95[CEU][hapmap];0.82[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.85[JPT][hapmap];0.92[TSI][hapmap];0.85[EUR][1000 genomes]
rs7641151	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7641164	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7643426	0.84[CEU][hapmap];0.81[TSI][hapmap]
rs880160	0.98[ASN][1000 genomes]
rs9818635	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9849715	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9856805	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9990060	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46120800-46129400	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr3:46123200-46129600	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr3:46123400-46130400	Weak transcription	Adipose Nuclei	Adipose
4	chr3:46125400-46128400	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr3:46125800-46130600	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr3:46126200-46132600	Weak transcription	Right Atrium	heart
7	chr3:46127000-46128200	Enhancers	Fetal Lung	lung
8	chr3:46127000-46128200	Enhancers	Spleen	Spleen
9	chr3:46127000-46128400	Enhancers	Stomach Smooth Muscle	stomach
10	chr3:46127000-46128400	Enhancers	HSMMtube	muscle
11	chr3:46127200-46128200	Enhancers	Esophagus	oesophagus
12	chr3:46127200-46138200	Weak transcription	Primary T cells from cord blood	blood
13	chr3:46127400-46128200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr3:46127400-46128400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr3:46127400-46130600	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr3:46127600-46128400	Enhancers	Colon Smooth Muscle	Colon
17	chr3:46127600-46129000	Weak transcription	Fetal Thymus	thymus
18	chr3:46127600-46129400	Enhancers	Hela-S3	cervix
19	chr3:46127600-46130200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr3:46127600-46130200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr3:46127600-46130400	Weak transcription	HMEC	breast
22	chr3:46127600-46130400	Weak transcription	NHDF-Ad	bronchial
23	chr3:46127600-46130600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr3:46127800-46128400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr3:46127800-46128400	Enhancers	Fetal Heart	heart
26	chr3:46127800-46130400	Weak transcription	NHEK	skin
27	chr3:46127800-46130600	Weak transcription	Placenta	Placenta
28	chr3:46128000-46129200	Weak transcription	Primary monocytes fromperipheralblood	blood
29	chr3:46128000-46130400	Weak transcription	Skeletal Muscle Male	skeletal muscle

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