Variant report

Variant	rs2133662
Chromosome Location	chr3:46089534-46089535
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12054287	1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13320534	0.81[CHB][hapmap]
rs1491953	0.81[ASN][1000 genomes]
rs1491960	0.81[CHB][hapmap]
rs1546079	0.87[CHB][hapmap]
rs17078387	0.83[CHB][hapmap]
rs2191031	0.83[CHB][hapmap]
rs2236938	0.83[CHB][hapmap]
rs3764864	0.83[CHB][hapmap]
rs3774641	0.83[CHB][hapmap]
rs4447807	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4683169	0.82[EUR][1000 genomes]
rs56800498	0.83[EUR][1000 genomes]
rs58035200	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60991632	0.82[EUR][1000 genomes]
rs62242832	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62242846	0.83[EUR][1000 genomes]
rs62243871	0.85[ASN][1000 genomes]
rs62243875	0.85[EUR][1000 genomes]
rs62243876	0.85[EUR][1000 genomes]
rs62243906	0.82[EUR][1000 genomes]
rs6763341	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6807854	0.84[EUR][1000 genomes]
rs7623476	0.88[CHB][hapmap];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7629999	0.83[EUR][1000 genomes]
rs7643426	0.86[EUR][1000 genomes]
rs9818635	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	esv2756987	chr3:46016464-46120400	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv2759145	chr3:46016464-46120400	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv1805205	chr3:46032847-46111081	Flanking Active TSS Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46086600-46090000	Enhancers	Dnd41	blood
2	chr3:46087600-46090200	Enhancers	Primary T cells fromperipheralblood	blood
3	chr3:46087600-46095800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr3:46088000-46090400	Weak transcription	Placenta	Placenta
5	chr3:46088600-46090400	Weak transcription	NHEK	skin
6	chr3:46088800-46090000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr3:46089200-46089600	Enhancers	Brain Germinal Matrix	brain

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