Variant report

Variant	rs12107600
Chromosome Location	chr3:46174174-46174175
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10433607	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13320534	0.87[CEU][hapmap];0.93[CHB][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1491960	0.81[CHB][hapmap]
rs4490402	0.83[YRI][hapmap]
rs62243906	0.81[ASN][1000 genomes]
rs62243907	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6807854	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46167000-46175600	Weak transcription	Fetal Lung	lung
2	chr3:46168800-46178200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr3:46170000-46177200	Enhancers	Fetal Thymus	thymus
4	chr3:46170800-46174200	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr3:46171600-46175400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
6	chr3:46172200-46174800	Weak transcription	Fetal Muscle Leg	muscle
7	chr3:46172800-46174200	Active TSS	Primary B cells from cord blood	blood
8	chr3:46172800-46174600	Weak transcription	Duodenum Mucosa	Duodenum
9	chr3:46173000-46176800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr3:46173200-46175000	Weak transcription	GM12878-XiMat	blood
11	chr3:46173200-46175200	Enhancers	Placenta	Placenta
12	chr3:46173400-46174400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr3:46173400-46175200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
14	chr3:46173800-46176400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr3:46173800-46184400	Weak transcription	Spleen	Spleen
16	chr3:46174000-46175000	Weak transcription	Adipose Nuclei	Adipose
17	chr3:46174000-46202800	Weak transcription	Skeletal Muscle Female	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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