Variant report

Variant	rs9854309
Chromosome Location	chr3:51182814-51182815
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs28418687	0.87[AFR][1000 genomes]
rs28552475	0.87[AFR][1000 genomes]
rs28603111	0.87[AFR][1000 genomes]
rs9311463	0.87[AFR][1000 genomes]
rs9821062	1.00[AFR][1000 genomes]
rs9822429	1.00[AFR][1000 genomes]
rs9830142	1.00[AFR][1000 genomes]
rs9833519	1.00[AFR][1000 genomes]
rs9839792	1.00[AFR][1000 genomes]
rs9845160	1.00[AFR][1000 genomes]
rs9846191	0.87[AFR][1000 genomes]
rs9851527	0.87[AFR][1000 genomes]
rs9854979	0.87[AFR][1000 genomes]
rs9869541	1.00[AFR][1000 genomes]
rs9877841	1.00[AFR][1000 genomes]
rs9877968	0.87[AFR][1000 genomes]
rs9880318	1.00[AFR][1000 genomes]
rs9884107	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491647	chr3:50856276-51245158	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1005858	chr3:51090373-51444027	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv536569	chr3:51090373-51444027	Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51168200-51210600	Weak transcription	Brain Angular Gyrus	brain
2	chr3:51181200-51184000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr3:51182200-51197800	Weak transcription	Brain Inferior Temporal Lobe	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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