Variant report

Variant	rs9880318
Chromosome Location	chr3:51152498-51152499
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs13314460	1.00[YRI][hapmap]
rs13316002	1.00[YRI][hapmap]
rs13326451	1.00[YRI][hapmap]
rs28418687	0.87[AFR][1000 genomes]
rs28552475	0.87[AFR][1000 genomes]
rs28603111	0.87[AFR][1000 genomes]
rs9311459	1.00[YRI][hapmap]
rs9311463	0.87[AFR][1000 genomes]
rs9818282	1.00[YRI][hapmap]
rs9820588	1.00[YRI][hapmap]
rs9820926	1.00[YRI][hapmap]
rs9821062	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9821821	1.00[YRI][hapmap]
rs9822429	1.00[AFR][1000 genomes]
rs9829027	1.00[YRI][hapmap]
rs9830142	1.00[AFR][1000 genomes]
rs9831449	1.00[YRI][hapmap]
rs9831727	1.00[YRI][hapmap]
rs9833519	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9839792	1.00[AFR][1000 genomes]
rs9841588	1.00[YRI][hapmap]
rs9843246	1.00[YRI][hapmap]
rs9844965	1.00[YRI][hapmap]
rs9845160	1.00[AFR][1000 genomes]
rs9846191	0.87[AFR][1000 genomes]
rs9846454	1.00[YRI][hapmap]
rs9848930	1.00[YRI][hapmap]
rs9851527	0.87[AFR][1000 genomes]
rs9853711	1.00[YRI][hapmap]
rs9854309	1.00[AFR][1000 genomes]
rs9854979	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs9860032	1.00[YRI][hapmap]
rs9862968	1.00[YRI][hapmap]
rs9863694	1.00[YRI][hapmap]
rs9869000	1.00[YRI][hapmap]
rs9869541	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9871213	1.00[YRI][hapmap]
rs9877841	1.00[AFR][1000 genomes]
rs9877968	0.87[AFR][1000 genomes]
rs9884107	1.00[AFR][1000 genomes]
rs9989957	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491647	chr3:50856276-51245158	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1005858	chr3:51090373-51444027	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv536569	chr3:51090373-51444027	Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases
4	esv3447639	chr3:51129523-51158383	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51144400-51168000	Weak transcription	Brain Angular Gyrus	brain
2	chr3:51146000-51168000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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