Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs13314460	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs13316002	1.00[YRI][hapmap]
rs13326451	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap]
rs28796000	1.00[AFR][1000 genomes]
rs9311466	1.00[AFR][1000 genomes]
rs9311468	1.00[LWK][hapmap];1.00[YRI][hapmap]
rs9818282	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap]
rs9821062	1.00[MKK][hapmap];1.00[YRI][hapmap]
rs9829027	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap]
rs9833519	1.00[YRI][hapmap]
rs9846454	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9848930	1.00[LWK][hapmap];1.00[YRI][hapmap]
rs9853711	1.00[YRI][hapmap]
rs9854165	1.00[LWK][hapmap];1.00[YRI][hapmap]
rs9854979	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap]
rs9860032	1.00[YRI][hapmap]
rs9861830	0.87[AFR][1000 genomes]
rs9862968	1.00[YRI][hapmap]
rs9863694	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap]
rs9869541	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs9871213	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap]
rs9876356	1.00[AFR][1000 genomes]
rs9878810	0.87[AFR][1000 genomes]
rs9880318	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491647	chr3:50856276-51245158	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1005858	chr3:51090373-51444027	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv536569	chr3:51090373-51444027	Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51211600-51218600	Weak transcription	Brain Angular Gyrus	brain
2	chr3:51212800-51218200	Weak transcription	Brain Germinal Matrix	brain
3	chr3:51213000-51216000	Weak transcription	Brain Hippocampus Middle	brain
4	chr3:51213000-51218200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:51213000-51219800	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr3:51213000-51246000	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr3:51213200-51216800	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr3:51215200-51216000	Enhancers	Left Ventricle	heart

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