Variant report

Variant	rs9871213
Chromosome Location	chr3:51321213-51321214
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs13314460	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs58562986	1.00[AFR][1000 genomes]
rs9311468	1.00[LWK][hapmap];1.00[YRI][hapmap]
rs9821062	1.00[YRI][hapmap]
rs9831727	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap]
rs9833519	1.00[YRI][hapmap]
rs9839560	0.87[AFR][1000 genomes]
rs9846454	1.00[YRI][hapmap]
rs9848930	1.00[LWK][hapmap];1.00[YRI][hapmap]
rs9853711	1.00[YRI][hapmap]
rs9854165	1.00[LWK][hapmap];1.00[YRI][hapmap]
rs9854979	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap]
rs9860032	1.00[YRI][hapmap]
rs9862968	1.00[YRI][hapmap]
rs9869541	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap]
rs9880318	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005858	chr3:51090373-51444027	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv536569	chr3:51090373-51444027	Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1014464	chr3:51220151-51909780	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51308200-51323000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:51313000-51322800	Weak transcription	HSMMtube	muscle
3	chr3:51313000-51323800	Weak transcription	Fetal Brain Male	brain
4	chr3:51313400-51321800	Weak transcription	Right Ventricle	heart
5	chr3:51313400-51322800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr3:51315400-51350000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr3:51317800-51322200	Weak transcription	Brain Cingulate Gyrus	brain
8	chr3:51318000-51322000	Weak transcription	Brain Anterior Caudate	brain
9	chr3:51318200-51328600	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr3:51318600-51324400	Weak transcription	Brain Substantia Nigra	brain
11	chr3:51319400-51322800	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr3:51319600-51322400	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr3:51319600-51324000	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr3:51319600-51324200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr3:51319800-51321600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr3:51319800-51323800	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr3:51320000-51321400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr3:51320000-51321400	Enhancers	Muscle Satellite Cultured Cells	--
19	chr3:51320000-51322200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr3:51320000-51322600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr3:51320000-51324200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr3:51320400-51321600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr3:51320600-51321400	Enhancers	Primary T cells from cord blood	blood
24	chr3:51320600-51321800	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr3:51320600-51321800	Strong transcription	Fetal Brain Female	brain
26	chr3:51320600-51322600	Strong transcription	Brain Angular Gyrus	brain
27	chr3:51320800-51322000	Strong transcription	Stomach Smooth Muscle	stomach
28	chr3:51320800-51322800	Strong transcription	Brain Hippocampus Middle	brain
29	chr3:51320800-51323000	Strong transcription	Brain Germinal Matrix	brain
30	chr3:51321000-51321400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr3:51321000-51321600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr3:51321000-51321600	Enhancers	NHEK	skin
33	chr3:51321000-51321800	Enhancers	HMEC	breast
34	chr3:51321000-51324400	Weak transcription	Colon Smooth Muscle	Colon
35	chr3:51321000-51324600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr3:51321200-51321400	Enhancers	NH-A	brain

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