Variant report

Variant	rs9855952
Chromosome Location	chr3:61432959-61432960
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11712558	0.98[ASN][1000 genomes]
rs11720645	0.81[ASN][1000 genomes]
rs11918585	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1453754	0.97[AFR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1453756	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1563139	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55993363	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56752710	0.98[ASN][1000 genomes]
rs6780914	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73837567	0.98[ASN][1000 genomes]
rs9854168	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876867	chr3:61054494-61474575	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv432423	chr3:61100255-61606060	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1008399	chr3:61176965-61461349	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv876869	chr3:61357417-61444443	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv834711	chr3:61413762-61612539	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
6	nsv876870	chr3:61425165-61490746	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:61429800-61433400	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr3:61430400-61433000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr3:61430400-61433200	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr3:61431600-61433200	Enhancers	Fetal Lung	lung
5	chr3:61431800-61440200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr3:61432600-61433400	Enhancers	Brain Germinal Matrix	brain
7	chr3:61432600-61435200	Enhancers	HSMMtube	muscle
8	chr3:61432800-61433600	Enhancers	HSMM	muscle
9	chr3:61432800-61434600	Enhancers	Skeletal Muscle Male	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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