Variant report

Variant	rs9857781
Chromosome Location	chr3:43347116-43347117
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:43328259..43329793-chr3:43345734..43348023,2	K562	blood:
2	chr3:43346468..43349157-chr3:43351424..43353068,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10865932	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs13065491	0.85[AFR][1000 genomes]
rs13320571	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7649401	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752008	chr3:43285369-43360879	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1009102	chr3:43285369-43369712	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv876732	chr3:43326887-43360879	Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv3398724	chr3:43346814-43347147	Weak transcription Genic enhancers Strong transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3397387	chr3:43346911-43347188	Weak transcription Strong transcription Genic enhancers Active TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43330800-43359000	Weak transcription	Fetal Brain Male	brain
2	chr3:43331400-43358200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:43332400-43361600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr3:43332800-43377000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr3:43335400-43351000	Weak transcription	Fetal Stomach	stomach
6	chr3:43337000-43354400	Weak transcription	A549	lung
7	chr3:43337400-43358200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr3:43339600-43356200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr3:43340000-43358600	Weak transcription	Colonic Mucosa	Colon
10	chr3:43340200-43359000	Weak transcription	Brain Cingulate Gyrus	brain
11	chr3:43340200-43361200	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr3:43340400-43358200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr3:43340400-43358200	Weak transcription	Brain Hippocampus Middle	brain
14	chr3:43340600-43349200	Weak transcription	Brain Substantia Nigra	brain
15	chr3:43340600-43349800	Weak transcription	Aorta	Aorta
16	chr3:43340600-43352400	Weak transcription	Right Ventricle	heart
17	chr3:43340600-43352400	Weak transcription	Small Intestine	intestine
18	chr3:43340600-43358600	Weak transcription	Brain Angular Gyrus	brain
19	chr3:43340600-43358800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr3:43340600-43358800	Weak transcription	Colon Smooth Muscle	Colon
21	chr3:43340600-43359200	Weak transcription	Gastric	stomach
22	chr3:43340600-43365600	Weak transcription	Esophagus	oesophagus
23	chr3:43341000-43359000	Weak transcription	Spleen	Spleen
24	chr3:43341200-43348200	Genic enhancers	Primary T helper cells fromperipheralblood	blood
25	chr3:43342000-43359200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr3:43342200-43354600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr3:43342600-43355800	Strong transcription	HUVEC	blood vessel
28	chr3:43343200-43356400	Weak transcription	Fetal Intestine Small	intestine
29	chr3:43343400-43348000	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr3:43343800-43357200	Strong transcription	Fetal Thymus	thymus
31	chr3:43344000-43347400	Strong transcription	Fetal Intestine Large	intestine
32	chr3:43344000-43355400	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr3:43344200-43358200	Weak transcription	Psoas Muscle	Psoas
34	chr3:43344400-43347800	Strong transcription	Dnd41	blood
35	chr3:43344400-43348400	Genic enhancers	Primary T helper cells PMA-I stimulated	--
36	chr3:43344600-43347200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr3:43344600-43347400	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
38	chr3:43344600-43347600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr3:43344600-43347600	Genic enhancers	Primary T cells from cord blood	blood
40	chr3:43344600-43347600	Strong transcription	NHDF-Ad	bronchial
41	chr3:43344600-43348000	Strong transcription	Primary hematopoietic stem cells	blood
42	chr3:43344600-43348400	Strong transcription	Hela-S3	cervix
43	chr3:43344600-43348800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr3:43344600-43349600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr3:43344600-43351600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
46	chr3:43344600-43359400	Strong transcription	Primary monocytes fromperipheralblood	blood
47	chr3:43344800-43347600	Strong transcription	HUES64 Cell Line	embryonic stem cell
48	chr3:43344800-43350400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr3:43345000-43368200	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr3:43345200-43347200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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