Variant report

Variant	rs10865932
Chromosome Location	chr3:43341653-43341654
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:43327770..43329938-chr3:43337733..43342180,4	K562	blood:

Variant related genes	Relation type
ENSG00000163788	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs12634274	1.00[CHB][hapmap];0.86[CHD][hapmap];0.94[GIH][hapmap]
rs13065491	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13320571	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1384433	1.00[CHB][hapmap]
rs1395372	1.00[CHB][hapmap]
rs1588027	1.00[CHB][hapmap];0.94[GIH][hapmap]
rs17075317	0.82[JPT][hapmap]
rs17075535	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17075558	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17075596	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17075597	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17075600	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17075630	0.82[CHB][hapmap];0.89[GIH][hapmap];0.82[JPT][hapmap]
rs17075705	1.00[CHB][hapmap]
rs17075743	1.00[CHB][hapmap]
rs2372372	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2372437	1.00[CHB][hapmap]
rs2888298	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4128529	1.00[CHB][hapmap]
rs4510359	1.00[CHB][hapmap];0.94[GIH][hapmap]
rs4682678	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4682679	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4682682	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4682685	1.00[CHB][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4682882	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4683366	1.00[JPT][hapmap]
rs6441772	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6441777	1.00[CHB][hapmap]
rs6770540	1.00[CHB][hapmap]
rs6783741	1.00[CHB][hapmap];0.94[GIH][hapmap]
rs6791641	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6800983	1.00[CHB][hapmap];0.94[GIH][hapmap]
rs6803929	0.89[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7621298	0.82[JPT][hapmap]
rs7623883	0.81[ASN][1000 genomes]
rs7628317	1.00[CHB][hapmap]
rs7649401	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9311339	1.00[CHB][hapmap];0.94[GIH][hapmap]
rs9681394	0.93[CHD][hapmap];0.88[GIH][hapmap];0.82[JPT][hapmap];0.86[TSI][hapmap]
rs977911	1.00[CHB][hapmap];0.94[GIH][hapmap]
rs9834842	1.00[CEU][hapmap]
rs9836386	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9857781	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752008	chr3:43285369-43360879	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1009102	chr3:43285369-43369712	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv876732	chr3:43326887-43360879	Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43329200-43344800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:43329200-43346800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr3:43329400-43346400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr3:43329600-43345000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr3:43330400-43344800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr3:43330800-43344600	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr3:43330800-43359000	Weak transcription	Fetal Brain Male	brain
8	chr3:43331000-43344600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr3:43331200-43344600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr3:43331400-43344600	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr3:43331400-43344600	Weak transcription	Fetal Muscle Trunk	muscle
12	chr3:43331400-43358200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr3:43331600-43344600	Weak transcription	Placenta	Placenta
14	chr3:43331600-43344600	Weak transcription	Hela-S3	cervix
15	chr3:43331600-43344800	Weak transcription	Brain Germinal Matrix	brain
16	chr3:43332400-43361600	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr3:43332800-43377000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr3:43333000-43344600	Weak transcription	Fetal Brain Female	brain
19	chr3:43333000-43344600	Weak transcription	NH-A	brain
20	chr3:43333200-43344800	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr3:43334800-43342200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr3:43335000-43344600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr3:43335400-43344600	Weak transcription	Ovary	ovary
24	chr3:43335400-43351000	Weak transcription	Fetal Stomach	stomach
25	chr3:43336800-43344600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
26	chr3:43337000-43344600	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr3:43337000-43344800	Weak transcription	Fetal Kidney	kidney
28	chr3:43337000-43354400	Weak transcription	A549	lung
29	chr3:43337400-43358200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr3:43338200-43342400	Weak transcription	Fetal Intestine Small	intestine
31	chr3:43338400-43342600	Genic enhancers	HUVEC	blood vessel
32	chr3:43338400-43344600	Weak transcription	Fetal Lung	lung
33	chr3:43338400-43344600	Weak transcription	NHDF-Ad	bronchial
34	chr3:43338600-43344000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr3:43338600-43344000	Weak transcription	Fetal Intestine Large	intestine
36	chr3:43338600-43344600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr3:43338600-43344600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr3:43338600-43344600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr3:43338600-43344600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr3:43338600-43344600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr3:43338600-43344600	Weak transcription	HSMM	muscle
42	chr3:43338600-43344800	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr3:43338600-43344800	Weak transcription	HSMMtube	muscle
44	chr3:43338600-43344800	Weak transcription	K562	blood
45	chr3:43338600-43344800	Weak transcription	NHLF	lung
46	chr3:43338600-43344800	Weak transcription	Osteobl	bone
47	chr3:43338600-43345000	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr3:43338800-43341800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr3:43338800-43344600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr3:43338800-43344600	Weak transcription	HMEC	breast

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