Variant report

Variant	rs9311339
Chromosome Location	chr3:43449995-43449996
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:43431381..43434005-chr3:43447529..43451601,3	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10865932	1.00[CHB][hapmap];0.94[GIH][hapmap]
rs12634274	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13320571	1.00[CHB][hapmap];0.94[GIH][hapmap]
rs1384433	0.81[ASW][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.87[YRI][hapmap];0.80[ASN][1000 genomes]
rs1395372	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1506617	1.00[CEU][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1588027	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17075597	1.00[CHB][hapmap];0.94[GIH][hapmap]
rs17075630	0.82[CEU][hapmap];0.82[CHB][hapmap];0.94[GIH][hapmap];0.91[TSI][hapmap];0.82[EUR][1000 genomes]
rs17075705	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17075743	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs17075792	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.80[ASN][1000 genomes]
rs17075814	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap]
rs17075848	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap]
rs2372437	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.80[ASN][1000 genomes]
rs3755603	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3772170	0.90[ASW][hapmap];0.81[TSI][hapmap];0.91[YRI][hapmap]
rs4128529	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4395382	0.80[ASN][1000 genomes]
rs4462942	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.80[ASN][1000 genomes]
rs4510359	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4586783	0.90[ASW][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.95[YRI][hapmap];0.80[ASN][1000 genomes]
rs4630916	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4682685	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4682686	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4682689	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap]
rs4682882	1.00[CHB][hapmap]
rs4682887	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4682893	0.81[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.87[YRI][hapmap]
rs4683366	1.00[JPT][hapmap]
rs6441772	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[YRI][hapmap];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6441777	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs6770540	0.90[ASW][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.95[YRI][hapmap];0.83[AMR][1000 genomes]
rs6783741	0.90[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6791641	1.00[CHB][hapmap]
rs6799364	0.81[ASW][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.80[ASN][1000 genomes]
rs6800983	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6803929	1.00[CHB][hapmap];0.94[GIH][hapmap]
rs7623883	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7628317	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs7631398	0.80[ASN][1000 genomes]
rs965928	0.87[YRI][hapmap]
rs9681394	0.86[CHD][hapmap];0.82[GIH][hapmap]
rs977911	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9863943	0.80[ASN][1000 genomes]
rs9876172	1.00[CEU][hapmap]

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43421400-43454800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:43430000-43460200	Weak transcription	Aorta	Aorta
3	chr3:43432000-43450800	Weak transcription	Esophagus	oesophagus
4	chr3:43432000-43453600	Weak transcription	Gastric	stomach
5	chr3:43432000-43460200	Weak transcription	Rectal Smooth Muscle	rectum
6	chr3:43432000-43477800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr3:43432200-43453800	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr3:43432400-43453800	Weak transcription	Primary T cells from cord blood	blood
9	chr3:43433400-43458800	Weak transcription	Pancreas	Pancrea
10	chr3:43436400-43450600	Weak transcription	Placenta	Placenta
11	chr3:43436400-43452200	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr3:43436400-43475800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr3:43440800-43464400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr3:43441000-43453800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr3:43442000-43450800	Weak transcription	Ovary	ovary
16	chr3:43442000-43455200	Weak transcription	Right Ventricle	heart
17	chr3:43442200-43455200	Weak transcription	Fetal Stomach	stomach
18	chr3:43442400-43460200	Weak transcription	Fetal Muscle Leg	muscle
19	chr3:43442600-43460200	Weak transcription	Adipose Nuclei	Adipose
20	chr3:43443000-43495600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr3:43443400-43465800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr3:43447000-43452400	Weak transcription	Colon Smooth Muscle	Colon
23	chr3:43447000-43465800	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr3:43447600-43451000	Strong transcription	Duodenum Mucosa	Duodenum
25	chr3:43447800-43450200	Weak transcription	Right Atrium	heart
26	chr3:43447800-43452600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr3:43447800-43453000	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr3:43447800-43460400	Weak transcription	Left Ventricle	heart
29	chr3:43447800-43481200	Weak transcription	Lung	lung
30	chr3:43448000-43453000	Weak transcription	Fetal Brain Female	brain
31	chr3:43448000-43453000	Weak transcription	HUVEC	blood vessel
32	chr3:43448200-43454600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr3:43448200-43464800	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr3:43448200-43464800	Weak transcription	Osteobl	bone
35	chr3:43448400-43450600	Weak transcription	Fetal Lung	lung
36	chr3:43448400-43451200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr3:43448400-43460200	Weak transcription	HSMM	muscle
38	chr3:43449000-43450000	Weak transcription	Fetal Intestine Small	intestine
39	chr3:43449000-43451000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr3:43449000-43451000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr3:43449000-43451800	Weak transcription	Primary hematopoietic stem cells	blood
42	chr3:43449000-43473000	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr3:43449000-43474400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr3:43449200-43451000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr3:43449200-43465600	Weak transcription	HMEC	breast
46	chr3:43449400-43454400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr3:43449600-43452400	Weak transcription	Brain Hippocampus Middle	brain
48	chr3:43449600-43455000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr3:43449600-43460000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr3:43449600-43462600	Weak transcription	Primary neutrophils fromperipheralblood	blood

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