Variant report

Variant	rs1506617
Chromosome Location	chr3:43429421-43429422
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:43428078..43430818-chr3:43661611..43663847,2	K562	blood:

Variant related genes	Relation type
ENSG00000160746	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12634274	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1384433	0.80[ASN][1000 genomes]
rs1395372	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1588027	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17075630	0.82[EUR][1000 genomes]
rs17075705	1.00[CEU][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17075743	0.80[ASN][1000 genomes]
rs17075792	0.80[ASN][1000 genomes]
rs2372437	0.80[ASN][1000 genomes]
rs4128529	1.00[CEU][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4395382	0.80[ASN][1000 genomes]
rs4462942	0.80[ASN][1000 genomes]
rs4510359	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4586783	0.80[ASN][1000 genomes]
rs4630916	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4682685	1.00[CEU][hapmap];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4682686	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4682887	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6441772	1.00[CEU][hapmap];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6441777	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs6770540	0.83[AMR][1000 genomes]
rs6783741	1.00[CEU][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6799364	0.80[ASN][1000 genomes]
rs6800983	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7623883	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7628317	0.80[ASN][1000 genomes]
rs7631398	0.80[ASN][1000 genomes]
rs9311339	1.00[CEU][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs977911	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9863943	0.80[ASN][1000 genomes]
rs9876172	1.00[CEU][hapmap]

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43391600-43436000	Weak transcription	Colonic Mucosa	Colon
2	chr3:43408600-43431200	Weak transcription	Duodenum Mucosa	Duodenum
3	chr3:43408800-43429800	Weak transcription	Right Ventricle	heart
4	chr3:43408800-43431000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr3:43420400-43429600	Weak transcription	Psoas Muscle	Psoas
6	chr3:43420400-43431000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr3:43420800-43429600	Weak transcription	HSMMtube	muscle
8	chr3:43421200-43431400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr3:43421200-43431600	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr3:43421400-43430800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr3:43421400-43436200	Weak transcription	Stomach Smooth Muscle	stomach
12	chr3:43421400-43454800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr3:43427200-43432000	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr3:43427400-43429600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr3:43427400-43430400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr3:43427400-43430600	Enhancers	Primary neutrophils fromperipheralblood	blood
17	chr3:43427400-43430800	Enhancers	Primary T cells from cord blood	blood
18	chr3:43427400-43430800	Enhancers	Primary T killer memory cells from peripheral blood	blood
19	chr3:43427400-43431000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr3:43427400-43433400	Enhancers	Primary T cells fromperipheralblood	blood
21	chr3:43427800-43430000	Enhancers	Spleen	Spleen
22	chr3:43428000-43430000	Enhancers	Pancreas	Pancrea
23	chr3:43428200-43430200	Enhancers	Fetal Muscle Leg	muscle
24	chr3:43428200-43430400	Enhancers	Primary T helper cells PMA-I stimulated	--
25	chr3:43428200-43430800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
26	chr3:43428200-43433200	Enhancers	Primary T helper cells fromperipheralblood	blood
27	chr3:43428400-43430000	Enhancers	Lung	lung
28	chr3:43428400-43431200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr3:43428400-43436400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr3:43428400-43441800	Weak transcription	Fetal Stomach	stomach
31	chr3:43428600-43430800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
32	chr3:43428800-43430200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
33	chr3:43428800-43430400	Enhancers	HUVEC	blood vessel
34	chr3:43428800-43430800	Enhancers	Primary T helper naive cells from peripheral blood	blood
35	chr3:43428800-43430800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
36	chr3:43428800-43432200	Enhancers	Fetal Thymus	thymus
37	chr3:43428800-43432600	Enhancers	Thymus	Thymus
38	chr3:43428800-43432800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr3:43428800-43432800	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr3:43428800-43447600	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr3:43429000-43430000	Enhancers	Fetal Muscle Trunk	muscle
42	chr3:43429000-43430600	Enhancers	Right Atrium	heart
43	chr3:43429000-43431000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
44	chr3:43429000-43432400	Enhancers	Primary hematopoietic stem cells	blood
45	chr3:43429200-43430400	Enhancers	Placenta	Placenta
46	chr3:43429200-43431000	Enhancers	Primary hematopoietic stem cells short term culture	blood
47	chr3:43429200-43432200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
48	chr3:43429200-43433400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr3:43429200-43436600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
50	chr3:43429400-43429800	Weak transcription	Left Ventricle	heart

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