Variant report

Variant	rs1588027
Chromosome Location	chr3:43434353-43434354
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10865932	1.00[CHB][hapmap];0.94[GIH][hapmap]
rs12634274	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13320571	1.00[CHB][hapmap];0.94[GIH][hapmap]
rs1384433	0.81[ASW][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.87[YRI][hapmap];0.80[ASN][1000 genomes]
rs1395372	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1506617	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17075597	1.00[CHB][hapmap];0.94[GIH][hapmap]
rs17075630	0.82[CEU][hapmap];0.82[CHB][hapmap];0.94[GIH][hapmap];0.84[TSI][hapmap];0.82[EUR][1000 genomes]
rs17075705	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17075743	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs17075792	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.80[ASN][1000 genomes]
rs17075814	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap]
rs17075848	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap]
rs2372437	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.80[ASN][1000 genomes]
rs3755603	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3772170	0.90[ASW][hapmap];0.81[TSI][hapmap];0.91[YRI][hapmap]
rs4128529	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4395382	0.80[ASN][1000 genomes]
rs4462942	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.80[ASN][1000 genomes]
rs4510359	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4586783	0.90[ASW][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.95[YRI][hapmap];0.80[ASN][1000 genomes]
rs4630916	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4682685	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4682686	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4682689	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap]
rs4682882	1.00[CHB][hapmap]
rs4682887	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4682893	0.81[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.87[YRI][hapmap]
rs4683366	1.00[JPT][hapmap]
rs6441772	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[YRI][hapmap];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6441777	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs6770540	0.90[ASW][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.95[YRI][hapmap];0.83[AMR][1000 genomes]
rs6783741	0.90[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6791641	1.00[CHB][hapmap]
rs6799364	0.81[ASW][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.80[ASN][1000 genomes]
rs6800983	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6803929	1.00[CHB][hapmap];0.94[GIH][hapmap]
rs7623883	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7628317	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs7631398	0.80[ASN][1000 genomes]
rs9311339	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9681394	0.86[CHD][hapmap];0.82[GIH][hapmap]
rs977911	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9863943	0.80[ASN][1000 genomes]
rs9876172	1.00[CEU][hapmap]

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43391600-43436000	Weak transcription	Colonic Mucosa	Colon
2	chr3:43421400-43436200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr3:43421400-43454800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:43428400-43436400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr3:43428400-43441800	Weak transcription	Fetal Stomach	stomach
6	chr3:43428800-43447600	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr3:43429200-43436600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr3:43430000-43449400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr3:43430000-43460200	Weak transcription	Aorta	Aorta
10	chr3:43430600-43442600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr3:43431000-43435800	Weak transcription	Colon Smooth Muscle	Colon
12	chr3:43431200-43436000	Enhancers	HUVEC	blood vessel
13	chr3:43431600-43435600	Weak transcription	Fetal Lung	lung
14	chr3:43431800-43436200	Weak transcription	Fetal Kidney	kidney
15	chr3:43431800-43440400	Weak transcription	HSMMtube	muscle
16	chr3:43431800-43447000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr3:43432000-43435000	Weak transcription	Right Ventricle	heart
18	chr3:43432000-43435800	Weak transcription	Osteobl	bone
19	chr3:43432000-43445600	Weak transcription	K562	blood
20	chr3:43432000-43446600	Weak transcription	HSMM	muscle
21	chr3:43432000-43450800	Weak transcription	Esophagus	oesophagus
22	chr3:43432000-43453600	Weak transcription	Gastric	stomach
23	chr3:43432000-43460200	Weak transcription	Rectal Smooth Muscle	rectum
24	chr3:43432000-43477800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr3:43432200-43435000	Weak transcription	Placenta	Placenta
26	chr3:43432200-43435000	Weak transcription	Left Ventricle	heart
27	chr3:43432200-43435000	Weak transcription	Right Atrium	heart
28	chr3:43432200-43435200	Weak transcription	Adipose Nuclei	Adipose
29	chr3:43432200-43435600	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr3:43432200-43435600	Weak transcription	Fetal Muscle Trunk	muscle
31	chr3:43432200-43441200	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr3:43432200-43443400	Weak transcription	Duodenum Mucosa	Duodenum
33	chr3:43432200-43447000	Weak transcription	Small Intestine	intestine
34	chr3:43432200-43448000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr3:43432200-43453800	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr3:43432400-43434400	Weak transcription	Primary hematopoietic stem cells	blood
37	chr3:43432400-43435200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr3:43432400-43435200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr3:43432400-43447600	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr3:43432400-43453800	Weak transcription	Primary T cells from cord blood	blood
41	chr3:43433200-43447600	Weak transcription	Lung	lung
42	chr3:43433400-43434800	Weak transcription	Primary neutrophils fromperipheralblood	blood
43	chr3:43433400-43435000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr3:43433400-43435000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr3:43433400-43435200	Weak transcription	Fetal Muscle Leg	muscle
46	chr3:43433400-43435600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr3:43433400-43435600	Weak transcription	Psoas Muscle	Psoas
48	chr3:43433400-43448600	Weak transcription	NHEK	skin
49	chr3:43433400-43458800	Weak transcription	Pancreas	Pancrea
50	chr3:43433600-43434600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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