Variant report

Variant	rs6800983
Chromosome Location	chr3:43436968-43436969
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:43435850..43438260-chr3:43444953..43446705,3	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10865932	1.00[CHB][hapmap];0.94[GIH][hapmap]
rs12634274	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13320571	1.00[CHB][hapmap];0.94[GIH][hapmap]
rs1384433	0.81[ASW][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.87[YRI][hapmap];0.80[ASN][1000 genomes]
rs1395372	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1506617	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1588027	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17075597	1.00[CHB][hapmap];0.94[GIH][hapmap]
rs17075630	0.82[CEU][hapmap];0.82[CHB][hapmap];0.94[GIH][hapmap];0.84[TSI][hapmap];0.82[EUR][1000 genomes]
rs17075705	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17075743	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs17075792	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.80[ASN][1000 genomes]
rs17075814	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap]
rs17075848	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap]
rs2372437	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.80[ASN][1000 genomes]
rs3755603	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3772170	0.90[ASW][hapmap];0.81[TSI][hapmap];0.91[YRI][hapmap]
rs4128529	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4395382	0.80[ASN][1000 genomes]
rs4462942	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.80[ASN][1000 genomes]
rs4510359	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4586783	0.90[ASW][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.95[YRI][hapmap];0.80[ASN][1000 genomes]
rs4630916	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4682685	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4682686	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4682689	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap]
rs4682882	1.00[CHB][hapmap]
rs4682887	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4682893	0.81[ASW][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.87[YRI][hapmap]
rs4683366	1.00[JPT][hapmap]
rs6441772	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[YRI][hapmap];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6441777	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs6770540	0.90[ASW][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.95[YRI][hapmap];0.83[AMR][1000 genomes]
rs6783741	0.90[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6791641	1.00[CHB][hapmap]
rs6799364	0.81[ASW][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.80[ASN][1000 genomes]
rs6803929	1.00[CHB][hapmap];0.94[GIH][hapmap]
rs7623883	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7628317	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs7631398	0.80[ASN][1000 genomes]
rs9311339	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9681394	0.82[GIH][hapmap]
rs977911	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9863943	0.80[ASN][1000 genomes]
rs9876172	1.00[CEU][hapmap]

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43421400-43454800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:43428400-43441800	Weak transcription	Fetal Stomach	stomach
3	chr3:43428800-43447600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr3:43430000-43449400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr3:43430000-43460200	Weak transcription	Aorta	Aorta
6	chr3:43430600-43442600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr3:43431800-43440400	Weak transcription	HSMMtube	muscle
8	chr3:43431800-43447000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr3:43432000-43445600	Weak transcription	K562	blood
10	chr3:43432000-43446600	Weak transcription	HSMM	muscle
11	chr3:43432000-43450800	Weak transcription	Esophagus	oesophagus
12	chr3:43432000-43453600	Weak transcription	Gastric	stomach
13	chr3:43432000-43460200	Weak transcription	Rectal Smooth Muscle	rectum
14	chr3:43432000-43477800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr3:43432200-43441200	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr3:43432200-43443400	Weak transcription	Duodenum Mucosa	Duodenum
17	chr3:43432200-43447000	Weak transcription	Small Intestine	intestine
18	chr3:43432200-43448000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr3:43432200-43453800	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr3:43432400-43447600	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr3:43432400-43453800	Weak transcription	Primary T cells from cord blood	blood
22	chr3:43433200-43447600	Weak transcription	Lung	lung
23	chr3:43433400-43448600	Weak transcription	NHEK	skin
24	chr3:43433400-43458800	Weak transcription	Pancreas	Pancrea
25	chr3:43435000-43437200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr3:43435800-43440200	Weak transcription	Right Atrium	heart
27	chr3:43435800-43440400	Weak transcription	Left Ventricle	heart
28	chr3:43435800-43448800	Weak transcription	Primary neutrophils fromperipheralblood	blood
29	chr3:43436000-43441600	Weak transcription	Fetal Lung	lung
30	chr3:43436200-43446800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr3:43436400-43437600	Enhancers	HUVEC	blood vessel
32	chr3:43436400-43440000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr3:43436400-43440600	Weak transcription	NHDF-Ad	bronchial
34	chr3:43436400-43441400	Weak transcription	Fetal Muscle Leg	muscle
35	chr3:43436400-43441400	Weak transcription	Right Ventricle	heart
36	chr3:43436400-43441800	Weak transcription	Adipose Nuclei	Adipose
37	chr3:43436400-43441800	Weak transcription	Stomach Smooth Muscle	stomach
38	chr3:43436400-43442000	Weak transcription	Fetal Muscle Trunk	muscle
39	chr3:43436400-43445400	Weak transcription	Psoas Muscle	Psoas
40	chr3:43436400-43450600	Weak transcription	Placenta	Placenta
41	chr3:43436400-43452200	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr3:43436400-43475800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr3:43436600-43439200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr3:43436600-43441800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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