Variant report

Variant	rs7631398
Chromosome Location	chr3:43571869-43571870
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:43569111..43571884-chr3:43573106..43575058,2	K562	blood:
2	chr3:43562365..43565525-chr3:43571764..43575100,3	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10461014	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12634274	0.80[ASN][1000 genomes]
rs1384433	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1395372	0.80[ASN][1000 genomes]
rs1506617	0.80[ASN][1000 genomes]
rs1588027	0.80[ASN][1000 genomes]
rs17075705	0.80[ASN][1000 genomes]
rs17075743	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17075792	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17075814	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17075848	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2372437	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3755603	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3772170	0.88[EUR][1000 genomes]
rs4128529	0.80[ASN][1000 genomes]
rs4395382	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4462942	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4586783	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4630916	0.83[ASN][1000 genomes]
rs4682686	0.80[ASN][1000 genomes]
rs4682689	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4682887	0.80[ASN][1000 genomes]
rs4682893	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58731196	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6441777	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6770540	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6783741	0.80[ASN][1000 genomes]
rs6799364	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6800983	0.80[ASN][1000 genomes]
rs7613972	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7628317	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9311339	0.80[ASN][1000 genomes]
rs965928	0.80[EUR][1000 genomes]
rs977911	0.80[ASN][1000 genomes]
rs9832135	0.93[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9863943	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9874278	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428738	chr3:43491435-43651168	Strong transcription Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	esv2763720	chr3:43551038-43575884	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43539200-43575000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr3:43540000-43582000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr3:43540200-43602200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr3:43542800-43588800	Weak transcription	Left Ventricle	heart
5	chr3:43544000-43617600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr3:43547600-43595800	Weak transcription	Fetal Stomach	stomach
7	chr3:43551000-43577800	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr3:43553000-43601600	Weak transcription	Colon Smooth Muscle	Colon
9	chr3:43553600-43595800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr3:43554000-43579000	Weak transcription	Fetal Brain Male	brain
11	chr3:43554800-43573400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr3:43554800-43589400	Weak transcription	HSMMtube	muscle
13	chr3:43556200-43624800	Weak transcription	Rectal Smooth Muscle	rectum
14	chr3:43557000-43577200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr3:43558600-43625600	Weak transcription	Lung	lung
16	chr3:43560800-43618000	Weak transcription	Brain Hippocampus Middle	brain
17	chr3:43561200-43601200	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr3:43561400-43600400	Weak transcription	Stomach Smooth Muscle	stomach
19	chr3:43561600-43588800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr3:43561600-43589000	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr3:43561600-43590600	Weak transcription	Ovary	ovary
22	chr3:43561600-43601000	Weak transcription	Pancreas	Pancrea
23	chr3:43561800-43590600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr3:43561800-43602000	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr3:43562000-43575800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr3:43562000-43589200	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr3:43563200-43580000	Weak transcription	HSMM	muscle
28	chr3:43565400-43573200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr3:43565400-43580000	Weak transcription	Aorta	Aorta
30	chr3:43565400-43583600	Weak transcription	Fetal Intestine Small	intestine
31	chr3:43565600-43572000	Weak transcription	Fetal Kidney	kidney
32	chr3:43565600-43573400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr3:43565600-43573400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr3:43565600-43573400	Weak transcription	HUVEC	blood vessel
35	chr3:43565600-43576000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr3:43566600-43577600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr3:43567000-43583400	Weak transcription	K562	blood
38	chr3:43567200-43583200	Weak transcription	Duodenum Mucosa	Duodenum
39	chr3:43567400-43578600	Weak transcription	Primary monocytes fromperipheralblood	blood
40	chr3:43567800-43573400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr3:43568200-43573400	Weak transcription	Osteobl	bone
42	chr3:43568200-43580800	Weak transcription	Primary neutrophils fromperipheralblood	blood
43	chr3:43568400-43573400	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr3:43569600-43587800	Weak transcription	Primary T cells from cord blood	blood
45	chr3:43570200-43580000	Weak transcription	Monocytes-CD14+_RO01746	blood
46	chr3:43570600-43575800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr3:43570800-43576000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr3:43570800-43577200	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr3:43571000-43575800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr3:43571000-43577400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links