Variant report

Variant	rs4395382
Chromosome Location	chr3:43522759-43522760
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:43461327..43463781-chr3:43520762..43522812,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10461014	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12634274	0.80[ASN][1000 genomes]
rs1384433	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1395372	0.80[ASN][1000 genomes]
rs1506617	0.80[ASN][1000 genomes]
rs1588027	0.80[ASN][1000 genomes]
rs17075705	0.80[ASN][1000 genomes]
rs17075743	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17075792	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17075814	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17075848	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2372437	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3755603	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3772170	0.88[EUR][1000 genomes]
rs4128529	0.80[ASN][1000 genomes]
rs4462942	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4586783	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4630916	0.83[ASN][1000 genomes]
rs4682686	0.80[ASN][1000 genomes]
rs4682689	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4682887	0.80[ASN][1000 genomes]
rs4682893	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58731196	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6441777	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6770540	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6783741	0.80[ASN][1000 genomes]
rs6799364	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6800983	0.80[ASN][1000 genomes]
rs7613972	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7628317	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7631398	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9311339	0.80[ASN][1000 genomes]
rs965928	0.80[EUR][1000 genomes]
rs977911	0.80[ASN][1000 genomes]
rs9832135	0.90[ASN][1000 genomes]
rs9863943	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9874278	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428738	chr3:43491435-43651168	Strong transcription Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43473400-43541400	Weak transcription	Aorta	Aorta
2	chr3:43497000-43539400	Weak transcription	HSMM	muscle
3	chr3:43497200-43532600	Weak transcription	K562	blood
4	chr3:43504800-43553400	Weak transcription	Duodenum Mucosa	Duodenum
5	chr3:43506600-43522800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr3:43513000-43524600	Weak transcription	Psoas Muscle	Psoas
7	chr3:43515000-43526400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr3:43515000-43532400	Weak transcription	Pancreas	Pancrea
9	chr3:43515600-43523400	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr3:43516000-43526600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr3:43519400-43524200	Weak transcription	Spleen	Spleen
12	chr3:43519600-43539000	Weak transcription	Right Atrium	heart
13	chr3:43519800-43524000	Weak transcription	Placenta	Placenta
14	chr3:43519800-43538200	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr3:43520200-43523000	Weak transcription	NHLF	lung
16	chr3:43520200-43523800	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr3:43520200-43523800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr3:43520200-43524000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr3:43520400-43524000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr3:43520600-43524000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr3:43521200-43523400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr3:43521400-43522800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr3:43521400-43524200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr3:43521400-43526600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr3:43521600-43523000	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr3:43521600-43523800	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr3:43521800-43523200	Enhancers	Brain Cingulate Gyrus	brain
28	chr3:43522000-43524000	Weak transcription	Primary T cells from cord blood	blood
29	chr3:43522000-43524000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr3:43522000-43524000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr3:43522000-43524000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr3:43522000-43524000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr3:43522000-43532200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr3:43522200-43522800	Enhancers	HUES48 Cell Line	embryonic stem cell
35	chr3:43522200-43523800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr3:43522200-43524000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr3:43522200-43525800	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr3:43522200-43538200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr3:43522200-43538800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr3:43522400-43522800	Enhancers	iPS-18 Cell Line	embryonic stem cell
41	chr3:43522400-43523200	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr3:43522400-43523400	Enhancers	HUES64 Cell Line	embryonic stem cell
43	chr3:43522400-43523400	Enhancers	iPS-15b Cell Line	embryonic stem cell
44	chr3:43522400-43525600	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr3:43522400-43539600	Weak transcription	HSMMtube	muscle
46	chr3:43522600-43523800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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