Variant report

Variant	rs4682887
Chromosome Location	chr3:43460453-43460454
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:43460060..43463983-chr3:43465462..43468851,3	K562	blood:
2	chr3:43459180..43460847-chr3:43465221..43468188,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12634274	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1384433	0.80[ASN][1000 genomes]
rs1395372	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1506617	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1588027	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17075705	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17075743	0.80[ASN][1000 genomes]
rs17075792	0.80[ASN][1000 genomes]
rs2372437	0.80[ASN][1000 genomes]
rs4128529	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4395382	0.80[ASN][1000 genomes]
rs4462942	0.80[ASN][1000 genomes]
rs4510359	0.86[ASN][1000 genomes]
rs4586783	0.80[ASN][1000 genomes]
rs4630916	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4682685	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4682686	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6441772	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6441777	0.80[ASN][1000 genomes]
rs6783741	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6799364	0.80[ASN][1000 genomes]
rs6800983	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7623883	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7628317	0.80[ASN][1000 genomes]
rs7631398	0.80[ASN][1000 genomes]
rs9311339	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs977911	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9863943	0.80[ASN][1000 genomes]

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43432000-43477800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr3:43436400-43475800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr3:43440800-43464400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:43443000-43495600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr3:43443400-43465800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr3:43447000-43465800	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr3:43447800-43481200	Weak transcription	Lung	lung
8	chr3:43448200-43464800	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr3:43448200-43464800	Weak transcription	Osteobl	bone
10	chr3:43449000-43473000	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr3:43449000-43474400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr3:43449200-43465600	Weak transcription	HMEC	breast
13	chr3:43449600-43462600	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr3:43451000-43473000	Weak transcription	Duodenum Mucosa	Duodenum
15	chr3:43453600-43467000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr3:43453800-43460600	Weak transcription	Brain Angular Gyrus	brain
17	chr3:43455600-43464000	Weak transcription	Psoas Muscle	Psoas
18	chr3:43455600-43475400	Weak transcription	Fetal Muscle Trunk	muscle
19	chr3:43455600-43484400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr3:43455800-43460600	Weak transcription	Brain Hippocampus Middle	brain
21	chr3:43455800-43465800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr3:43455800-43473000	Weak transcription	Fetal Stomach	stomach
23	chr3:43455800-43473600	Weak transcription	Brain Anterior Caudate	brain
24	chr3:43455800-43477200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr3:43456600-43467200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr3:43457000-43492800	Weak transcription	K562	blood
27	chr3:43458800-43460800	Enhancers	Pancreas	Pancrea
28	chr3:43459000-43476000	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr3:43459800-43460600	Enhancers	HepG2	liver
30	chr3:43459800-43460800	Enhancers	Stomach Mucosa	stomach
31	chr3:43459800-43461200	Enhancers	HUVEC	blood vessel
32	chr3:43459800-43472800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr3:43459800-43496400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr3:43460000-43460600	Enhancers	iPS-15b Cell Line	embryonic stem cell
35	chr3:43460000-43460600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr3:43460200-43460600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr3:43460200-43460600	Enhancers	Spleen	Spleen
38	chr3:43460200-43460800	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr3:43460200-43460800	Enhancers	Adipose Nuclei	Adipose
40	chr3:43460200-43460800	Enhancers	Aorta	Aorta
41	chr3:43460200-43460800	Enhancers	Colon Smooth Muscle	Colon
42	chr3:43460200-43460800	Enhancers	Fetal Muscle Leg	muscle
43	chr3:43460200-43460800	Enhancers	Rectal Smooth Muscle	rectum
44	chr3:43460200-43460800	Enhancers	Skeletal Muscle Female	skeletal muscle
45	chr3:43460200-43460800	Strong transcription	HSMM	muscle
46	chr3:43460200-43461000	Enhancers	Fetal Lung	lung
47	chr3:43460400-43460600	Enhancers	Duodenum Smooth Muscle	Duodenum
48	chr3:43460400-43460800	Enhancers	Cortex derived primary cultured neurospheres	brain
49	chr3:43460400-43460800	Enhancers	Left Ventricle	heart
50	chr3:43460400-43460800	Enhancers	Right Ventricle	heart

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