Variant report

Variant	rs7623883
Chromosome Location	chr3:43424873-43424874
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10865932	0.81[ASN][1000 genomes]
rs12634274	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13065491	0.81[ASN][1000 genomes]
rs1395372	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1506617	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1588027	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17075535	0.81[ASN][1000 genomes]
rs17075558	0.81[ASN][1000 genomes]
rs17075596	0.81[ASN][1000 genomes]
rs17075597	0.81[ASN][1000 genomes]
rs17075600	0.81[ASN][1000 genomes]
rs17075630	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17075705	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4128529	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4510359	0.82[EUR][1000 genomes]
rs4630916	0.93[EUR][1000 genomes]
rs4682682	0.81[ASN][1000 genomes]
rs4682685	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4682686	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4682882	0.81[ASN][1000 genomes]
rs4682887	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6441772	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6783741	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6791641	0.81[ASN][1000 genomes]
rs6800983	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6803929	0.81[ASN][1000 genomes]
rs7649401	0.81[ASN][1000 genomes]
rs9311339	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs977911	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43391600-43436000	Weak transcription	Colonic Mucosa	Colon
2	chr3:43408600-43431200	Weak transcription	Duodenum Mucosa	Duodenum
3	chr3:43408800-43429800	Weak transcription	Right Ventricle	heart
4	chr3:43408800-43431000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr3:43419800-43427400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr3:43419800-43427400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr3:43420000-43427400	Weak transcription	Primary T cells from cord blood	blood
8	chr3:43420400-43428000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr3:43420400-43428800	Weak transcription	Thymus	Thymus
10	chr3:43420400-43429200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr3:43420400-43429600	Weak transcription	Psoas Muscle	Psoas
12	chr3:43420400-43431000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr3:43420800-43429600	Weak transcription	HSMMtube	muscle
14	chr3:43421200-43429200	Weak transcription	Left Ventricle	heart
15	chr3:43421200-43431400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr3:43421200-43431600	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr3:43421400-43428000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr3:43421400-43430800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr3:43421400-43436200	Weak transcription	Stomach Smooth Muscle	stomach
20	chr3:43421400-43454800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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