Variant report

Variant	rs17075600
Chromosome Location	chr3:43401268-43401269
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:43400498..43402776-chr3:43452077..43454279,2	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10865932	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12634274	1.00[CHB][hapmap];0.94[GIH][hapmap]
rs13065491	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13320571	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1384433	1.00[CHB][hapmap]
rs1395372	1.00[CHB][hapmap]
rs1588027	1.00[CHB][hapmap];0.86[CHD][hapmap];0.94[GIH][hapmap]
rs17075317	0.82[JPT][hapmap]
rs17075535	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17075558	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17075596	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17075597	0.89[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.93[TSI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17075630	0.88[ASW][hapmap];0.82[CHB][hapmap];0.89[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap]
rs17075705	1.00[CHB][hapmap]
rs17075743	1.00[CHB][hapmap]
rs17075792	1.00[CHB][hapmap]
rs17075814	1.00[CHB][hapmap]
rs2372372	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2372437	1.00[CHB][hapmap]
rs2888298	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4128529	1.00[CHB][hapmap]
rs4462942	1.00[CHB][hapmap]
rs4510359	1.00[CHB][hapmap];0.86[CHD][hapmap];0.94[GIH][hapmap]
rs4586783	1.00[CHB][hapmap]
rs4682678	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4682679	0.89[EUR][1000 genomes]
rs4682682	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4682685	1.00[CHB][hapmap];0.86[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.81[ASN][1000 genomes]
rs4682689	1.00[CHB][hapmap]
rs4682882	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4682893	1.00[CHB][hapmap];0.85[CHD][hapmap]
rs4683366	1.00[JPT][hapmap]
rs6441772	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6441777	1.00[CHB][hapmap]
rs6770540	1.00[CHB][hapmap]
rs6783741	1.00[CHB][hapmap];0.86[CHD][hapmap];0.94[GIH][hapmap]
rs6791641	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6799364	1.00[CHB][hapmap]
rs6800983	1.00[CHB][hapmap];0.94[GIH][hapmap]
rs6803929	0.89[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.93[TSI][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7621298	0.82[JPT][hapmap]
rs7623883	0.81[ASN][1000 genomes]
rs7628317	1.00[CHB][hapmap]
rs7649401	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9311339	1.00[CHB][hapmap];0.86[CHD][hapmap];0.94[GIH][hapmap]
rs9681394	1.00[CHD][hapmap];0.88[GIH][hapmap];0.82[JPT][hapmap];0.88[MEX][hapmap];0.86[TSI][hapmap]
rs977911	1.00[CHB][hapmap];0.86[CHD][hapmap];0.94[GIH][hapmap]
rs9834842	1.00[CEU][hapmap]
rs9836386	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43385800-43402000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr3:43387600-43402600	Weak transcription	Right Atrium	heart
3	chr3:43390600-43403600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr3:43390600-43406600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr3:43390600-43407200	Weak transcription	Gastric	stomach
6	chr3:43390800-43402200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr3:43390800-43405200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr3:43391400-43405400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr3:43391600-43402000	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr3:43391600-43404200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr3:43391600-43436000	Weak transcription	Colonic Mucosa	Colon
12	chr3:43392200-43419600	Weak transcription	Rectal Smooth Muscle	rectum
13	chr3:43392800-43402200	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr3:43393000-43402000	Weak transcription	Left Ventricle	heart
15	chr3:43393000-43405000	Weak transcription	Pancreas	Pancrea
16	chr3:43393400-43402200	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr3:43395800-43406600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr3:43396000-43405600	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr3:43396600-43404000	Weak transcription	Spleen	Spleen
20	chr3:43396600-43404200	Weak transcription	Fetal Stomach	stomach
21	chr3:43396800-43402200	Weak transcription	HSMMtube	muscle
22	chr3:43396800-43403600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr3:43396800-43407000	Weak transcription	Aorta	Aorta
24	chr3:43396800-43407200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr3:43397000-43406400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr3:43400000-43419400	Weak transcription	Primary T cells from cord blood	blood
27	chr3:43400400-43401400	Enhancers	Fetal Thymus	thymus
28	chr3:43401000-43402000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr3:43401000-43402000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr3:43401000-43405000	Weak transcription	Thymus	Thymus
31	chr3:43401200-43401400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr3:43401200-43401400	Enhancers	Fetal Muscle Trunk	muscle
33	chr3:43401200-43404200	Enhancers	H1 Cell Line	embryonic stem cell

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