Variant report

Variant	rs17075630
Chromosome Location	chr3:43417495-43417496
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:43411353..43414757-chr3:43415544..43419725,4	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10865932	0.82[CHB][hapmap];0.89[GIH][hapmap];0.82[JPT][hapmap]
rs12634274	0.82[CEU][hapmap];0.82[CHB][hapmap];0.85[CHD][hapmap];0.94[GIH][hapmap];0.84[TSI][hapmap];0.82[EUR][1000 genomes]
rs13320571	0.82[CHB][hapmap];0.89[GIH][hapmap];0.82[JPT][hapmap]
rs1384433	0.82[CHB][hapmap]
rs1395372	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs1506617	0.82[EUR][1000 genomes]
rs1588027	0.82[CEU][hapmap];0.82[CHB][hapmap];0.94[GIH][hapmap];0.84[TSI][hapmap];0.82[EUR][1000 genomes]
rs17075597	0.82[CHB][hapmap];0.89[GIH][hapmap];0.82[JPT][hapmap];0.88[MEX][hapmap]
rs17075705	0.82[CEU][hapmap];0.82[CHB][hapmap];0.82[EUR][1000 genomes]
rs17075743	0.82[CHB][hapmap]
rs17075792	0.82[CHB][hapmap]
rs17075814	0.82[CHB][hapmap]
rs2372437	0.82[CHB][hapmap]
rs4128529	0.82[CHB][hapmap];0.82[EUR][1000 genomes]
rs4462942	0.82[CHB][hapmap]
rs4510359	0.82[CEU][hapmap];0.82[CHB][hapmap];0.94[GIH][hapmap];0.84[TSI][hapmap]
rs4586783	0.82[CHB][hapmap]
rs4630916	0.82[EUR][1000 genomes]
rs4682685	0.82[CEU][hapmap];0.82[CHB][hapmap];0.94[GIH][hapmap];0.82[JPT][hapmap];0.88[MEX][hapmap];0.84[TSI][hapmap];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4682686	0.82[EUR][1000 genomes]
rs4682689	0.82[CHB][hapmap]
rs4682882	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs4682893	0.82[CHB][hapmap]
rs6441772	0.82[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6441777	0.82[CHB][hapmap]
rs6770540	0.82[CHB][hapmap]
rs6783741	0.82[CEU][hapmap];0.82[CHB][hapmap];0.94[GIH][hapmap];0.84[TSI][hapmap];0.82[EUR][1000 genomes]
rs6791641	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs6799364	0.82[CHB][hapmap]
rs6800983	0.82[CEU][hapmap];0.82[CHB][hapmap];0.94[GIH][hapmap];0.84[TSI][hapmap];0.82[EUR][1000 genomes]
rs6803929	0.82[CHB][hapmap];0.89[GIH][hapmap];0.82[JPT][hapmap];0.88[MEX][hapmap]
rs7623883	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7628317	0.82[CHB][hapmap]
rs9311339	0.82[CEU][hapmap];0.82[CHB][hapmap];0.94[GIH][hapmap];0.91[TSI][hapmap];0.82[EUR][1000 genomes]
rs9681394	0.88[MEX][hapmap]
rs977911	0.82[CEU][hapmap];0.82[CHB][hapmap];0.94[GIH][hapmap];0.84[TSI][hapmap];0.82[EUR][1000 genomes]
rs9876172	0.82[CEU][hapmap]

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43391600-43436000	Weak transcription	Colonic Mucosa	Colon
2	chr3:43392200-43419600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr3:43400000-43419400	Weak transcription	Primary T cells from cord blood	blood
4	chr3:43403000-43419400	Weak transcription	Colon Smooth Muscle	Colon
5	chr3:43405000-43419400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr3:43408200-43419200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr3:43408200-43419800	Weak transcription	NHLF	lung
8	chr3:43408400-43418200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr3:43408400-43419600	Weak transcription	Fetal Intestine Small	intestine
10	chr3:43408600-43431200	Weak transcription	Duodenum Mucosa	Duodenum
11	chr3:43408800-43429800	Weak transcription	Right Ventricle	heart
12	chr3:43408800-43431000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr3:43409200-43420400	Weak transcription	HSMMtube	muscle
14	chr3:43411600-43419600	Weak transcription	Left Ventricle	heart
15	chr3:43411800-43421000	Weak transcription	Lung	lung
16	chr3:43413000-43419400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr3:43414200-43419200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr3:43414400-43418200	Weak transcription	Thymus	Thymus
19	chr3:43414400-43418800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr3:43414400-43419600	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr3:43415200-43418800	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr3:43415200-43420400	Weak transcription	NH-A	brain
23	chr3:43415400-43419200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr3:43415400-43419600	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr3:43415400-43420000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr3:43415400-43420200	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr3:43415400-43420200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr3:43415400-43420200	Weak transcription	Fetal Stomach	stomach
29	chr3:43415400-43420200	Weak transcription	Right Atrium	heart
30	chr3:43415400-43421000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr3:43415600-43419400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr3:43415600-43419400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr3:43415600-43419400	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr3:43415600-43419400	Weak transcription	Osteobl	bone
35	chr3:43415600-43419600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr3:43415600-43419800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr3:43415600-43420000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr3:43415600-43420200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr3:43415600-43420200	Weak transcription	HSMM	muscle
40	chr3:43415800-43419600	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr3:43415800-43419800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
42	chr3:43415800-43419800	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr3:43415800-43419800	Weak transcription	HUVEC	blood vessel
44	chr3:43415800-43420000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr3:43416200-43420800	Weak transcription	Fetal Muscle Leg	muscle
46	chr3:43417000-43420200	Enhancers	Fetal Thymus	thymus
47	chr3:43417200-43419000	Weak transcription	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links