Variant report

Variant	rs6791641
Chromosome Location	chr3:43372628-43372629
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:43369972..43373607-chr3:43380026..43382529,3	MCF-7	breast:
2	chr3:43369063..43371090-chr3:43371776..43373576,2	MCF-7	breast:
3	chr3:43370745..43373566-chr3:43732101..43734174,2	K562	blood:
4	chr3:43371288..43372921-chr3:43375023..43376609,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000011198	Chromatin interaction
ENSG00000160746	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10865932	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12634274	1.00[CHB][hapmap]
rs13065491	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13320571	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1384433	1.00[CHB][hapmap]
rs1395372	1.00[CHB][hapmap]
rs1588027	1.00[CHB][hapmap]
rs17075317	0.82[JPT][hapmap]
rs17075535	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17075558	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17075596	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17075597	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17075600	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17075630	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs17075705	1.00[CHB][hapmap]
rs17075743	1.00[CHB][hapmap]
rs2372372	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2372437	1.00[CHB][hapmap]
rs2888298	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4128529	1.00[CHB][hapmap]
rs4462942	1.00[CHB][hapmap]
rs4510359	1.00[CHB][hapmap]
rs4586783	1.00[CHB][hapmap]
rs4682678	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4682679	0.87[EUR][1000 genomes]
rs4682682	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4682685	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4682882	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4683366	1.00[JPT][hapmap]
rs6441772	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6441777	1.00[CHB][hapmap]
rs6770540	1.00[CHB][hapmap]
rs6783741	1.00[CHB][hapmap]
rs6799364	1.00[CHB][hapmap]
rs6800983	1.00[CHB][hapmap]
rs6803929	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7621298	0.82[JPT][hapmap]
rs7623883	0.81[ASN][1000 genomes]
rs7628317	1.00[CHB][hapmap]
rs7649401	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9311339	1.00[CHB][hapmap]
rs9681394	0.82[JPT][hapmap]
rs977911	1.00[CHB][hapmap]
rs9834842	1.00[CEU][hapmap]
rs9836386	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43332800-43377000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:43346000-43377000	Weak transcription	K562	blood
3	chr3:43348400-43378800	Weak transcription	Hela-S3	cervix
4	chr3:43351000-43375600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr3:43353000-43374000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr3:43353400-43375200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr3:43359400-43374000	Weak transcription	Placenta	Placenta
8	chr3:43359400-43376600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr3:43359600-43375400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr3:43359600-43376200	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr3:43360400-43375600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr3:43360400-43376200	Weak transcription	Brain Germinal Matrix	brain
13	chr3:43361200-43374600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr3:43361200-43377800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr3:43363600-43374000	Weak transcription	Fetal Muscle Trunk	muscle
16	chr3:43365400-43373600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr3:43367800-43375800	Weak transcription	Aorta	Aorta
18	chr3:43368200-43374200	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr3:43368200-43375000	Weak transcription	Fetal Stomach	stomach
20	chr3:43368200-43375600	Weak transcription	Spleen	Spleen
21	chr3:43368200-43375800	Weak transcription	Pancreas	Pancrea
22	chr3:43368200-43376200	Weak transcription	Lung	lung
23	chr3:43368200-43377000	Weak transcription	Ovary	ovary
24	chr3:43368200-43377200	Weak transcription	Gastric	stomach
25	chr3:43368200-43377600	Weak transcription	Colonic Mucosa	Colon
26	chr3:43368400-43376600	Weak transcription	Osteobl	bone
27	chr3:43368400-43379200	Weak transcription	Stomach Mucosa	stomach
28	chr3:43368400-43379400	Weak transcription	Fetal Brain Male	brain
29	chr3:43368600-43373800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr3:43368800-43375800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr3:43368800-43376800	Weak transcription	HepG2	liver
32	chr3:43369000-43373600	Weak transcription	GM12878-XiMat	blood
33	chr3:43369000-43374400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr3:43369000-43375000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr3:43369000-43375600	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr3:43369000-43375800	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr3:43369000-43377200	Weak transcription	Rectal Smooth Muscle	rectum
38	chr3:43369000-43378600	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr3:43369200-43374000	Weak transcription	Duodenum Mucosa	Duodenum
40	chr3:43369200-43374000	Weak transcription	Fetal Lung	lung
41	chr3:43369200-43375600	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr3:43369200-43376600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr3:43369400-43373000	Weak transcription	Primary B cells from cord blood	blood
44	chr3:43369400-43373600	Weak transcription	Liver	Liver
45	chr3:43369400-43374400	Weak transcription	Fetal Intestine Large	intestine
46	chr3:43369400-43375400	Weak transcription	Fetal Intestine Small	intestine
47	chr3:43369400-43376000	Weak transcription	Fetal Kidney	kidney
48	chr3:43369400-43379200	Weak transcription	Small Intestine	intestine
49	chr3:43369600-43377200	Weak transcription	Colon Smooth Muscle	Colon
50	chr3:43370200-43372800	Weak transcription	Primary hematopoietic stem cells	blood

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