Variant report

Variant	rs1384433
Chromosome Location	chr3:43527391-43527392
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10461014	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10865932	1.00[CHB][hapmap]
rs12634274	0.81[ASW][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.87[YRI][hapmap];0.80[ASN][1000 genomes]
rs13320571	1.00[CHB][hapmap]
rs1395372	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.80[ASN][1000 genomes]
rs1506617	0.80[ASN][1000 genomes]
rs1588027	0.81[ASW][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.87[YRI][hapmap];0.80[ASN][1000 genomes]
rs17075597	1.00[CHB][hapmap]
rs17075630	0.82[CHB][hapmap]
rs17075705	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs17075743	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17075792	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17075814	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17075848	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2372437	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3755603	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3772170	0.90[ASW][hapmap];1.00[GIH][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];0.88[EUR][1000 genomes]
rs4128529	1.00[CHB][hapmap];0.80[ASN][1000 genomes]
rs4395382	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4462942	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4510359	0.82[ASW][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap]
rs4586783	0.90[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4630916	0.83[ASN][1000 genomes]
rs4682685	1.00[CHB][hapmap];0.92[CHD][hapmap];0.81[TSI][hapmap]
rs4682686	0.80[ASN][1000 genomes]
rs4682689	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4682882	1.00[CHB][hapmap]
rs4682887	0.80[ASN][1000 genomes]
rs4682893	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58731196	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6441772	1.00[CHB][hapmap];0.91[YRI][hapmap]
rs6441777	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6770540	0.90[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6783741	0.90[ASW][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.87[YRI][hapmap];0.80[ASN][1000 genomes]
rs6791641	1.00[CHB][hapmap]
rs6799364	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6800983	0.81[ASW][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.87[YRI][hapmap];0.80[ASN][1000 genomes]
rs6803929	1.00[CHB][hapmap]
rs7613972	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7628317	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7631398	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9311339	0.81[ASW][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.87[YRI][hapmap];0.80[ASN][1000 genomes]
rs965928	1.00[CEU][hapmap];0.82[YRI][hapmap];0.80[EUR][1000 genomes]
rs977911	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.80[ASN][1000 genomes]
rs9832135	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9863943	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9874278	1.00[CEU][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428738	chr3:43491435-43651168	Strong transcription Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43473400-43541400	Weak transcription	Aorta	Aorta
2	chr3:43497000-43539400	Weak transcription	HSMM	muscle
3	chr3:43497200-43532600	Weak transcription	K562	blood
4	chr3:43504800-43553400	Weak transcription	Duodenum Mucosa	Duodenum
5	chr3:43515000-43532400	Weak transcription	Pancreas	Pancrea
6	chr3:43519600-43539000	Weak transcription	Right Atrium	heart
7	chr3:43519800-43538200	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr3:43522000-43532200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr3:43522200-43538200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr3:43522200-43538800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr3:43522400-43539600	Weak transcription	HSMMtube	muscle
12	chr3:43523200-43527800	Weak transcription	Brain Cingulate Gyrus	brain
13	chr3:43523400-43527400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr3:43523400-43531600	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr3:43524200-43539600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr3:43524400-43531000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr3:43524600-43532400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr3:43525800-43527800	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr3:43526000-43560800	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr3:43526200-43531400	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr3:43526400-43527400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr3:43526400-43527400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr3:43526400-43527400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr3:43526400-43538400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr3:43526600-43527400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr3:43526600-43527600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr3:43526800-43527600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr3:43527000-43532200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr3:43527000-43532200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr3:43527000-43539000	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr3:43527200-43527800	Enhancers	HUES64 Cell Line	embryonic stem cell
32	chr3:43527200-43560200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links