Variant report

Variant	rs1395372
Chromosome Location	chr3:43429941-43429942
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:43429740..43432675-chr3:43434360..43436612,3	K562	blood:
2	chr3:43429738..43431933-chr3:43437625..43439839,2	K562	blood:
3	chr3:43428078..43430818-chr3:43661611..43663847,2	K562	blood:

Variant related genes	Relation type
ENSG00000160746	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10865932	1.00[CHB][hapmap]
rs12634274	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13320571	1.00[CHB][hapmap]
rs1384433	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.80[ASN][1000 genomes]
rs1506617	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1588027	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17075597	1.00[CHB][hapmap]
rs17075630	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs17075705	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17075743	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs17075792	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs17075814	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2372437	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.80[ASN][1000 genomes]
rs3755603	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4128529	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4395382	0.80[ASN][1000 genomes]
rs4462942	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.80[ASN][1000 genomes]
rs4510359	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4586783	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs4630916	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4682685	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4682686	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4682689	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4682882	1.00[CHB][hapmap]
rs4682887	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4682893	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs4683366	1.00[JPT][hapmap]
rs6441772	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6441777	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs6770540	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6783741	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6791641	1.00[CHB][hapmap]
rs6799364	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs6800983	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6803929	1.00[CHB][hapmap]
rs7623883	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7628317	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs7631398	0.80[ASN][1000 genomes]
rs9311339	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs977911	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9863943	0.80[ASN][1000 genomes]
rs9874278	1.00[CEU][hapmap]
rs9876172	1.00[CEU][hapmap]

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43391600-43436000	Weak transcription	Colonic Mucosa	Colon
2	chr3:43408600-43431200	Weak transcription	Duodenum Mucosa	Duodenum
3	chr3:43408800-43431000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr3:43420400-43431000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr3:43421200-43431400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr3:43421200-43431600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr3:43421400-43430800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr3:43421400-43436200	Weak transcription	Stomach Smooth Muscle	stomach
9	chr3:43421400-43454800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr3:43427200-43432000	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr3:43427400-43430400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr3:43427400-43430600	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr3:43427400-43430800	Enhancers	Primary T cells from cord blood	blood
14	chr3:43427400-43430800	Enhancers	Primary T killer memory cells from peripheral blood	blood
15	chr3:43427400-43431000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr3:43427400-43433400	Enhancers	Primary T cells fromperipheralblood	blood
17	chr3:43427800-43430000	Enhancers	Spleen	Spleen
18	chr3:43428000-43430000	Enhancers	Pancreas	Pancrea
19	chr3:43428200-43430200	Enhancers	Fetal Muscle Leg	muscle
20	chr3:43428200-43430400	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr3:43428200-43430800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
22	chr3:43428200-43433200	Enhancers	Primary T helper cells fromperipheralblood	blood
23	chr3:43428400-43430000	Enhancers	Lung	lung
24	chr3:43428400-43431200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr3:43428400-43436400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr3:43428400-43441800	Weak transcription	Fetal Stomach	stomach
27	chr3:43428600-43430800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
28	chr3:43428800-43430200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
29	chr3:43428800-43430400	Enhancers	HUVEC	blood vessel
30	chr3:43428800-43430800	Enhancers	Primary T helper naive cells from peripheral blood	blood
31	chr3:43428800-43430800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
32	chr3:43428800-43432200	Enhancers	Fetal Thymus	thymus
33	chr3:43428800-43432600	Enhancers	Thymus	Thymus
34	chr3:43428800-43432800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr3:43428800-43432800	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr3:43428800-43447600	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr3:43429000-43430000	Enhancers	Fetal Muscle Trunk	muscle
38	chr3:43429000-43430600	Enhancers	Right Atrium	heart
39	chr3:43429000-43431000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
40	chr3:43429000-43432400	Enhancers	Primary hematopoietic stem cells	blood
41	chr3:43429200-43430400	Enhancers	Placenta	Placenta
42	chr3:43429200-43431000	Enhancers	Primary hematopoietic stem cells short term culture	blood
43	chr3:43429200-43432200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
44	chr3:43429200-43433400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr3:43429200-43436600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
46	chr3:43429400-43430400	Weak transcription	Small Intestine	intestine
47	chr3:43429400-43431600	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr3:43429400-43432400	Enhancers	Skeletal Muscle Male	skeletal muscle
49	chr3:43429600-43430000	Enhancers	Brain Substantia Nigra	brain
50	chr3:43429600-43430600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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