Variant report

Variant	rs4683366
Chromosome Location	chr3:43254320-43254321
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10865932	1.00[JPT][hapmap]
rs12634274	1.00[JPT][hapmap]
rs1316296	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1316297	0.90[EUR][1000 genomes]
rs1320156	0.90[EUR][1000 genomes]
rs13320571	1.00[JPT][hapmap]
rs1395372	1.00[JPT][hapmap]
rs1588027	1.00[JPT][hapmap]
rs17075317	1.00[JPT][hapmap]
rs17075335	1.00[JPT][hapmap]
rs17075342	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17075378	0.90[EUR][1000 genomes]
rs17075381	0.90[EUR][1000 genomes]
rs17075398	0.90[EUR][1000 genomes]
rs17075597	1.00[JPT][hapmap]
rs17075705	1.00[JPT][hapmap]
rs1814902	0.88[EUR][1000 genomes]
rs2372355	0.90[EUR][1000 genomes]
rs4585168	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4682675	0.88[EUR][1000 genomes]
rs4682677	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4682685	1.00[JPT][hapmap]
rs4682872	0.90[EUR][1000 genomes]
rs4682874	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4682875	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4682876	0.84[EUR][1000 genomes]
rs4682879	0.88[EUR][1000 genomes]
rs4682882	1.00[JPT][hapmap]
rs4683364	1.00[JPT][hapmap]
rs4683367	0.90[EUR][1000 genomes]
rs4683369	0.90[EUR][1000 genomes]
rs6441772	1.00[JPT][hapmap]
rs6781696	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6791641	1.00[JPT][hapmap]
rs6800983	1.00[JPT][hapmap]
rs6803929	1.00[JPT][hapmap]
rs7611123	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7621298	1.00[JPT][hapmap]
rs7621511	0.90[EUR][1000 genomes]
rs9311339	1.00[JPT][hapmap]
rs9681394	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9683242	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs977911	1.00[JPT][hapmap]
rs9809273	0.90[EUR][1000 genomes]
rs9820946	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834672	chr3:43132722-43306272	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43245000-43258800	Weak transcription	Right Atrium	heart
2	chr3:43247800-43259000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:43248600-43254800	Weak transcription	Duodenum Mucosa	Duodenum
4	chr3:43249800-43254400	Weak transcription	Fetal Intestine Large	intestine
5	chr3:43249800-43256000	Weak transcription	Fetal Kidney	kidney
6	chr3:43251000-43255200	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr3:43252600-43254400	Weak transcription	Stomach Mucosa	stomach
8	chr3:43253200-43262400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr3:43253400-43259000	Weak transcription	Spleen	Spleen
10	chr3:43253600-43256400	Weak transcription	Pancreas	Pancrea
11	chr3:43253600-43256600	Enhancers	Liver	Liver
12	chr3:43253600-43257400	Weak transcription	Left Ventricle	heart
13	chr3:43254000-43257000	Enhancers	Fetal Intestine Small	intestine
14	chr3:43254000-43257200	Enhancers	HMEC	breast
15	chr3:43254000-43258000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr3:43254200-43256000	Enhancers	NHEK	skin
17	chr3:43254200-43257800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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