Variant report

Variant	rs4585168
Chromosome Location	chr3:43291354-43291355
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:43287138..43289386-chr3:43291194..43294036,2	K562	blood:
2	chr3:43289737..43291817-chr3:43339501..43341574,2	K562	blood:
3	chr3:43264830..43267326-chr3:43290444..43292682,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1316296	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1316297	0.98[EUR][1000 genomes]
rs1320156	0.98[EUR][1000 genomes]
rs17075342	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17075378	0.98[EUR][1000 genomes]
rs17075381	0.98[EUR][1000 genomes]
rs17075398	0.98[EUR][1000 genomes]
rs1814902	0.95[EUR][1000 genomes]
rs2372355	0.98[EUR][1000 genomes]
rs4682675	0.95[EUR][1000 genomes]
rs4682677	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4682872	0.98[EUR][1000 genomes]
rs4682874	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4682875	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4682876	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4682879	0.95[EUR][1000 genomes]
rs4683366	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4683367	0.98[EUR][1000 genomes]
rs4683369	0.98[EUR][1000 genomes]
rs7611123	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7621511	0.98[EUR][1000 genomes]
rs9681394	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9683242	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9809273	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834672	chr3:43132722-43306272	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2752008	chr3:43285369-43360879	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1009102	chr3:43285369-43369712	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43284400-43300400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:43285800-43298400	Weak transcription	Left Ventricle	heart
3	chr3:43288600-43293000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr3:43289400-43293000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr3:43289800-43296400	Weak transcription	Primary hematopoietic stem cells	blood
6	chr3:43289800-43297400	Weak transcription	Primary B cells from cord blood	blood
7	chr3:43290000-43292800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr3:43290000-43292800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr3:43290000-43292800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr3:43290000-43294200	Weak transcription	Fetal Stomach	stomach
11	chr3:43290000-43296400	Weak transcription	Lung	lung
12	chr3:43290200-43292600	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr3:43290200-43292800	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr3:43290200-43292800	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr3:43290200-43292800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr3:43290400-43292800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr3:43290400-43292800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr3:43290400-43293000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr3:43290400-43293800	Weak transcription	Colon Smooth Muscle	Colon
20	chr3:43290400-43294800	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr3:43290400-43299400	Weak transcription	Right Atrium	heart
22	chr3:43290800-43292800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr3:43290800-43294000	Weak transcription	Stomach Smooth Muscle	stomach
24	chr3:43290800-43296600	Weak transcription	Spleen	Spleen
25	chr3:43290800-43300800	Weak transcription	Brain Anterior Caudate	brain

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