Variant report

Variant	rs17075381
Chromosome Location	chr3:43281706-43281707
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:43281582..43285022-chr3:43286584..43289819,3	K562	blood:

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs11129996	0.98[ASN][1000 genomes]
rs12715387	1.00[ASN][1000 genomes]
rs12715388	1.00[ASN][1000 genomes]
rs13059783	1.00[ASN][1000 genomes]
rs13060695	1.00[ASN][1000 genomes]
rs13066699	1.00[ASN][1000 genomes]
rs13074235	0.96[ASN][1000 genomes]
rs13085652	1.00[ASN][1000 genomes]
rs1316296	0.98[EUR][1000 genomes]
rs1316297	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1320156	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1320158	1.00[ASN][1000 genomes]
rs1573931	0.98[ASN][1000 genomes]
rs17075335	0.95[ASN][1000 genomes]
rs17075342	0.98[EUR][1000 genomes]
rs17075378	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17075398	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1814902	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2372352	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2372354	0.97[ASN][1000 genomes]
rs2372355	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2372356	1.00[ASN][1000 genomes]
rs2888295	1.00[ASN][1000 genomes]
rs2888296	1.00[ASN][1000 genomes]
rs4016130	0.95[ASN][1000 genomes]
rs4260403	0.98[ASN][1000 genomes]
rs4404425	1.00[ASN][1000 genomes]
rs4419357	0.94[ASN][1000 genomes]
rs4444688	1.00[ASN][1000 genomes]
rs4585168	0.98[EUR][1000 genomes]
rs4637262	1.00[ASN][1000 genomes]
rs4682675	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4682677	0.81[EUR][1000 genomes]
rs4682872	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4682874	0.90[EUR][1000 genomes]
rs4682875	0.91[EUR][1000 genomes]
rs4682876	0.89[EUR][1000 genomes]
rs4682879	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4683363	0.94[ASN][1000 genomes]
rs4683364	0.94[ASN][1000 genomes]
rs4683366	0.90[EUR][1000 genomes]
rs4683367	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4683369	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6442144	0.97[ASN][1000 genomes]
rs6762503	0.98[ASN][1000 genomes]
rs6781696	0.95[ASN][1000 genomes]
rs6798619	0.92[ASN][1000 genomes]
rs6805075	0.94[ASN][1000 genomes]
rs7611123	0.98[EUR][1000 genomes]
rs7621511	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7627198	1.00[ASN][1000 genomes]
rs7636673	0.95[ASN][1000 genomes]
rs7639584	0.98[ASN][1000 genomes]
rs7639605	0.95[ASN][1000 genomes]
rs9311334	0.94[ASN][1000 genomes]
rs9311335	1.00[ASN][1000 genomes]
rs9311336	1.00[ASN][1000 genomes]
rs9681394	0.90[EUR][1000 genomes]
rs9683242	0.98[EUR][1000 genomes]
rs9809273	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9820946	0.95[ASN][1000 genomes]
rs9822961	0.98[ASN][1000 genomes]
rs9826102	1.00[ASN][1000 genomes]
rs9826849	1.00[ASN][1000 genomes]
rs9827911	1.00[ASN][1000 genomes]
rs9833793	0.95[ASN][1000 genomes]
rs9852399	0.98[ASN][1000 genomes]
rs9853795	0.94[ASN][1000 genomes]
rs9858012	0.94[ASN][1000 genomes]
rs9860007	1.00[ASN][1000 genomes]
rs9860364	0.98[ASN][1000 genomes]
rs9861337	0.98[ASN][1000 genomes]
rs9861529	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834672	chr3:43132722-43306272	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43278400-43284200	Weak transcription	Thymus	Thymus
2	chr3:43278400-43285000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr3:43280200-43282000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr3:43280200-43282000	Enhancers	NHEK	skin
5	chr3:43280800-43282000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr3:43281000-43282000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr3:43281200-43282000	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr3:43281600-43281800	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr3:43281600-43282000	Enhancers	Stomach Mucosa	stomach
10	chr3:43281600-43284000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr3:43281600-43284600	Weak transcription	Primary T killer memory cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links