Variant report

Variant	rs4682876
Chromosome Location	chr3:43289618-43289619
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:43281582..43285022-chr3:43286584..43289819,3	K562	blood:
2	chr3:43288668..43290211-chr3:43327382..43329254,2	K562	blood:

Variant related genes	Relation type
ENSG00000163788	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1316296	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1316297	0.89[EUR][1000 genomes]
rs1320156	0.89[EUR][1000 genomes]
rs17075342	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17075378	0.89[EUR][1000 genomes]
rs17075381	0.89[EUR][1000 genomes]
rs17075398	0.89[EUR][1000 genomes]
rs1814902	0.87[EUR][1000 genomes]
rs2372355	0.89[EUR][1000 genomes]
rs4585168	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4682675	0.87[EUR][1000 genomes]
rs4682872	0.89[EUR][1000 genomes]
rs4682874	0.84[EUR][1000 genomes]
rs4682875	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4682879	0.87[EUR][1000 genomes]
rs4683366	0.84[EUR][1000 genomes]
rs4683367	0.89[EUR][1000 genomes]
rs4683369	0.89[EUR][1000 genomes]
rs7611123	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7621511	0.89[EUR][1000 genomes]
rs9681394	0.84[EUR][1000 genomes]
rs9683242	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9809273	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834672	chr3:43132722-43306272	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2752008	chr3:43285369-43360879	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1009102	chr3:43285369-43369712	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43284200-43289800	Enhancers	Primary T helper naive cells from peripheral blood	blood
2	chr3:43284400-43289800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr3:43284400-43290000	Enhancers	Primary T cells fromperipheralblood	blood
4	chr3:43284400-43290000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr3:43284400-43290400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr3:43284400-43300400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr3:43284600-43290000	Enhancers	Primary T cells from cord blood	blood
8	chr3:43285200-43290000	Enhancers	Primary B cells from peripheral blood	blood
9	chr3:43285400-43290000	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr3:43285600-43290800	Enhancers	Adipose Nuclei	Adipose
11	chr3:43285800-43298400	Weak transcription	Left Ventricle	heart
12	chr3:43286000-43289800	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr3:43286200-43290000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr3:43287000-43289800	Enhancers	Primary hematopoietic stem cells	blood
15	chr3:43287200-43290000	Enhancers	Thymus	Thymus
16	chr3:43287600-43290400	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr3:43287800-43290000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr3:43287800-43290400	Enhancers	Brain Hippocampus Middle	brain
19	chr3:43287800-43290400	Enhancers	Fetal Muscle Leg	muscle
20	chr3:43288000-43289800	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr3:43288000-43290000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr3:43288000-43290000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr3:43288200-43290000	Enhancers	Fetal Stomach	stomach
24	chr3:43288200-43290800	Enhancers	Stomach Smooth Muscle	stomach
25	chr3:43288400-43289800	Weak transcription	Psoas Muscle	Psoas
26	chr3:43288400-43290000	Enhancers	Brain Germinal Matrix	brain
27	chr3:43288400-43290200	Enhancers	Rectal Smooth Muscle	rectum
28	chr3:43288400-43290400	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr3:43288400-43290400	Enhancers	Colon Smooth Muscle	Colon
30	chr3:43288600-43293000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr3:43288800-43289800	Enhancers	Primary B cells from cord blood	blood
32	chr3:43288800-43289800	Weak transcription	Brain Anterior Caudate	brain
33	chr3:43288800-43290000	Enhancers	Duodenum Smooth Muscle	Duodenum
34	chr3:43288800-43290200	Enhancers	Primary T helper cells PMA-I stimulated	--
35	chr3:43289000-43290400	Enhancers	Right Atrium	heart
36	chr3:43289200-43289800	Enhancers	Primary monocytes fromperipheralblood	blood
37	chr3:43289200-43289800	Enhancers	Fetal Brain Female	brain
38	chr3:43289200-43290000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
39	chr3:43289200-43290000	Enhancers	Lung	lung
40	chr3:43289200-43290200	Enhancers	HUES48 Cell Line	embryonic stem cell
41	chr3:43289200-43290200	Enhancers	iPS-18 Cell Line	embryonic stem cell
42	chr3:43289200-43290400	Enhancers	iPS-15b Cell Line	embryonic stem cell
43	chr3:43289400-43289800	Enhancers	HUVEC	blood vessel
44	chr3:43289400-43290000	Enhancers	Monocytes-CD14+_RO01746	blood
45	chr3:43289400-43290200	Enhancers	H1 Cell Line	embryonic stem cell
46	chr3:43289400-43290200	Enhancers	HUES6 Cell Line	embryonic stem cell
47	chr3:43289400-43293000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
48	chr3:43289600-43289800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr3:43289600-43290000	Enhancers	H9 Cell Line	embryonic stem cell
50	chr3:43289600-43290000	Enhancers	Brain Substantia Nigra	brain

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