Variant report

Variant	rs4682685
Chromosome Location	chr3:43421243-43421244
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10865932	1.00[CHB][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12634274	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13065491	0.81[ASN][1000 genomes]
rs13320571	1.00[CHB][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap]
rs1384433	1.00[CHB][hapmap];0.92[CHD][hapmap];0.81[TSI][hapmap]
rs1395372	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1506617	1.00[CEU][hapmap];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1588027	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17075317	0.82[JPT][hapmap]
rs17075535	0.81[ASN][1000 genomes]
rs17075558	0.81[ASN][1000 genomes]
rs17075596	0.81[ASN][1000 genomes]
rs17075597	1.00[CHB][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[YRI][hapmap];0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs17075600	0.81[ASN][1000 genomes]
rs17075630	0.82[CEU][hapmap];0.82[CHB][hapmap];0.94[GIH][hapmap];0.82[JPT][hapmap];0.88[MEX][hapmap];0.84[TSI][hapmap];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17075705	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17075743	1.00[CHB][hapmap]
rs17075792	1.00[CHB][hapmap];0.92[CHD][hapmap];0.81[TSI][hapmap]
rs17075814	1.00[CHB][hapmap];0.92[CHD][hapmap];0.81[TSI][hapmap]
rs2372437	1.00[CHB][hapmap]
rs4128529	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[YRI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4462942	1.00[CHB][hapmap]
rs4510359	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs4586783	1.00[CHB][hapmap];0.92[CHD][hapmap];0.81[TSI][hapmap]
rs4630916	0.93[EUR][1000 genomes]
rs4682682	0.81[ASN][1000 genomes]
rs4682686	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4682689	1.00[CHB][hapmap];0.92[CHD][hapmap];0.81[TSI][hapmap]
rs4682882	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4682887	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4682893	1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[TSI][hapmap]
rs4683366	1.00[JPT][hapmap]
rs6441772	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6441777	1.00[CHB][hapmap]
rs6770540	1.00[CHB][hapmap];0.81[TSI][hapmap]
rs6783741	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6791641	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs6799364	1.00[CHB][hapmap];0.92[CHD][hapmap];0.81[TSI][hapmap]
rs6800983	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6803929	1.00[CHB][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[ASN][1000 genomes]
rs7621298	0.82[JPT][hapmap]
rs7623883	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7628317	1.00[CHB][hapmap]
rs7649401	0.81[ASN][1000 genomes]
rs9311339	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9681394	0.86[CHD][hapmap];0.82[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap]
rs977911	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9836386	0.87[ASN][1000 genomes]
rs9876172	1.00[CEU][hapmap];0.88[MEX][hapmap]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43391600-43436000	Weak transcription	Colonic Mucosa	Colon
2	chr3:43408600-43431200	Weak transcription	Duodenum Mucosa	Duodenum
3	chr3:43408800-43429800	Weak transcription	Right Ventricle	heart
4	chr3:43408800-43431000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr3:43419400-43421400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr3:43419400-43421400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr3:43419400-43421400	Enhancers	Adipose Nuclei	Adipose
8	chr3:43419400-43421600	Enhancers	Muscle Satellite Cultured Cells	--
9	chr3:43419400-43421600	Enhancers	Colon Smooth Muscle	Colon
10	chr3:43419400-43421600	Enhancers	Osteobl	bone
11	chr3:43419600-43421400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr3:43419600-43421400	Enhancers	Rectal Smooth Muscle	rectum
13	chr3:43419800-43421400	Enhancers	Stomach Smooth Muscle	stomach
14	chr3:43419800-43427400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr3:43419800-43427400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr3:43420000-43422600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr3:43420000-43427400	Weak transcription	Primary T cells from cord blood	blood
18	chr3:43420200-43421400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr3:43420200-43421400	Enhancers	Fetal Stomach	stomach
20	chr3:43420400-43428000	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr3:43420400-43428800	Weak transcription	Thymus	Thymus
22	chr3:43420400-43429200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr3:43420400-43429600	Weak transcription	Psoas Muscle	Psoas
24	chr3:43420400-43431000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr3:43420800-43429600	Weak transcription	HSMMtube	muscle
26	chr3:43421000-43421600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr3:43421200-43421600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr3:43421200-43429200	Weak transcription	Left Ventricle	heart
29	chr3:43421200-43431400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr3:43421200-43431600	Weak transcription	Brain Inferior Temporal Lobe	brain

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