Variant report

Variant	rs6441777
Chromosome Location	chr3:43503038-43503039
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10461014	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10865932	1.00[CHB][hapmap]
rs12634274	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs13320571	1.00[CHB][hapmap]
rs1384433	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1395372	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs1506617	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1588027	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs17075597	1.00[CHB][hapmap]
rs17075630	0.82[CHB][hapmap]
rs17075705	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs17075743	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17075792	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17075814	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17075848	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2372437	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3755603	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3772170	0.95[YRI][hapmap];0.81[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs4128529	1.00[CHB][hapmap];0.80[ASN][1000 genomes]
rs4395382	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4462942	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4510359	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4586783	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4630916	0.83[ASN][1000 genomes]
rs4682685	1.00[CHB][hapmap]
rs4682686	0.80[ASN][1000 genomes]
rs4682689	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4682882	1.00[CHB][hapmap]
rs4682887	0.80[ASN][1000 genomes]
rs4682893	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58731196	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6441772	1.00[CHB][hapmap]
rs6770540	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6783741	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs6791641	1.00[CHB][hapmap]
rs6799364	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6800983	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs6803929	1.00[CHB][hapmap]
rs7613972	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7628317	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7631398	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9311339	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs965928	1.00[CEU][hapmap];0.92[YRI][hapmap]
rs977911	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs9832135	0.90[ASN][1000 genomes]
rs9863943	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9874278	1.00[CEU][hapmap];0.83[AFR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428738	chr3:43491435-43651168	Strong transcription Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43473400-43541400	Weak transcription	Aorta	Aorta
2	chr3:43474200-43504400	Weak transcription	Duodenum Mucosa	Duodenum
3	chr3:43492600-43504200	Weak transcription	Fetal Intestine Small	intestine
4	chr3:43494600-43504200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr3:43496000-43509000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr3:43496800-43504200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr3:43496800-43509400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr3:43497000-43504200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr3:43497000-43504200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr3:43497000-43504200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr3:43497000-43504200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr3:43497000-43507000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr3:43497000-43514800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr3:43497000-43514800	Weak transcription	Gastric	stomach
15	chr3:43497000-43539400	Weak transcription	HSMM	muscle
16	chr3:43497200-43504200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr3:43497200-43506000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr3:43497200-43519600	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr3:43497200-43520000	Weak transcription	Stomach Smooth Muscle	stomach
20	chr3:43497200-43532600	Weak transcription	K562	blood
21	chr3:43498800-43504200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr3:43502400-43504000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr3:43502600-43503600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr3:43502600-43504600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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