Variant report

Variant	rs4682882
Chromosome Location	chr3:43405551-43405552
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:43403132..43406596-chr3:43407199..43410614,3	K562	blood:
2	chr3:43404577..43407359-chr3:43418115..43420347,2	K562	blood:

Variant related genes	Relation type
ENSG00000160746	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10865932	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12634274	1.00[CHB][hapmap]
rs13065491	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13320571	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1384433	1.00[CHB][hapmap]
rs1395372	1.00[CHB][hapmap]
rs1588027	1.00[CHB][hapmap]
rs17075317	0.82[JPT][hapmap]
rs17075535	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17075558	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17075596	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17075597	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17075600	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17075630	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs17075705	1.00[CHB][hapmap]
rs17075743	1.00[CHB][hapmap]
rs17075792	1.00[CHB][hapmap]
rs17075814	1.00[CHB][hapmap]
rs2372372	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2372437	1.00[CHB][hapmap]
rs2888298	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4128529	1.00[CHB][hapmap]
rs4462942	1.00[CHB][hapmap]
rs4510359	1.00[CHB][hapmap]
rs4586783	1.00[CHB][hapmap]
rs4682678	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4682679	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4682682	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4682685	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4682689	1.00[CHB][hapmap]
rs4682893	1.00[CHB][hapmap]
rs4683366	1.00[JPT][hapmap]
rs6441772	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6441777	1.00[CHB][hapmap]
rs6770540	1.00[CHB][hapmap]
rs6783741	1.00[CHB][hapmap]
rs6791641	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6799364	1.00[CHB][hapmap]
rs6800983	1.00[CHB][hapmap]
rs6803929	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7621298	0.82[JPT][hapmap]
rs7623883	0.81[ASN][1000 genomes]
rs7628317	1.00[CHB][hapmap]
rs7649401	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9311339	1.00[CHB][hapmap]
rs9681394	0.82[JPT][hapmap]
rs9683242	0.82[JPT][hapmap]
rs977911	1.00[CHB][hapmap]
rs9834842	0.90[CEU][hapmap]
rs9836386	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43390600-43406600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr3:43390600-43407200	Weak transcription	Gastric	stomach
3	chr3:43391600-43436000	Weak transcription	Colonic Mucosa	Colon
4	chr3:43392200-43419600	Weak transcription	Rectal Smooth Muscle	rectum
5	chr3:43395800-43406600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr3:43396000-43405600	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr3:43396800-43407000	Weak transcription	Aorta	Aorta
8	chr3:43396800-43407200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr3:43397000-43406400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr3:43400000-43419400	Weak transcription	Primary T cells from cord blood	blood
11	chr3:43401400-43414600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr3:43402000-43407000	Enhancers	Fetal Muscle Leg	muscle
13	chr3:43402200-43405600	Enhancers	HSMMtube	muscle
14	chr3:43402400-43413400	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr3:43402600-43406400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr3:43402600-43407000	Enhancers	Fetal Muscle Trunk	muscle
17	chr3:43402600-43408600	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr3:43402600-43413600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr3:43402800-43406800	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr3:43402800-43407200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr3:43403000-43412800	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr3:43403000-43419400	Weak transcription	Colon Smooth Muscle	Colon
23	chr3:43403200-43407200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr3:43403400-43406200	Weak transcription	Fetal Brain Female	brain
25	chr3:43403600-43408600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr3:43403800-43405600	Weak transcription	Brain Germinal Matrix	brain
27	chr3:43403800-43406000	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr3:43403800-43414600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr3:43404000-43406000	Enhancers	Placenta	Placenta
30	chr3:43404000-43406400	Enhancers	Ovary	ovary
31	chr3:43404000-43409400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr3:43404200-43405600	Enhancers	Right Ventricle	heart
33	chr3:43404200-43409200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr3:43404200-43411600	Weak transcription	Brain Substantia Nigra	brain
35	chr3:43404200-43413400	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr3:43404400-43406200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr3:43404400-43406200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr3:43404400-43406400	Weak transcription	Monocytes-CD14+_RO01746	blood
39	chr3:43404400-43406600	Enhancers	Adipose Nuclei	Adipose
40	chr3:43404600-43405600	Enhancers	Stomach Smooth Muscle	stomach
41	chr3:43404600-43405800	Enhancers	Fetal Lung	lung
42	chr3:43404600-43406400	Weak transcription	Primary monocytes fromperipheralblood	blood
43	chr3:43404600-43406400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr3:43404600-43406400	Weak transcription	Fetal Intestine Large	intestine
45	chr3:43404600-43409400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr3:43404600-43409600	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr3:43404600-43414600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr3:43404800-43406200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr3:43404800-43406600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr3:43404800-43407400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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