Variant report

Variant	rs17075596
Chromosome Location	chr3:43393014-43393015
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:43389522-43394326	HepG2	liver:	n/a	n/a
2	POLR2A	chr3:43392586-43393016	Hela-S3	cervix:	n/a	n/a
3	POLR2A	chr3:43392901-43393092	H1-hESC	embryonic stem cell:	n/a	n/a
4	POLR2A	chr3:43392981-43393089	GM12878	blood:	n/a	n/a
5	POLR2A	chr3:43392481-43394283	HUVEC	blood vessel:	n/a	n/a
6	POLR2A	chr3:43392960-43393036	Hela-S3	cervix:	n/a	n/a
7	POLR2A	chr3:43392434-43394122	K562	blood:	n/a	n/a
8	FOSL2	chr3:43392948-43393356	HepG2	liver:	n/a	n/a
9	POLR2A	chr3:43392859-43394022	HUVEC	blood vessel:	n/a	n/a
10	POLR2A	chr3:43392986-43394031	HUVEC	blood vessel:	n/a	n/a

Variant related genes	Relation type
ENSG00000271941	TF binding region

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10865932	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12634274	1.00[CHB][hapmap]
rs13065491	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13320571	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1384433	1.00[CHB][hapmap]
rs1395372	1.00[CHB][hapmap]
rs1588027	1.00[CHB][hapmap]
rs17075317	0.82[JPT][hapmap]
rs17075535	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17075558	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17075597	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17075600	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17075630	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs17075705	1.00[CHB][hapmap]
rs17075743	1.00[CHB][hapmap]
rs17075792	1.00[CHB][hapmap]
rs17075814	1.00[CHB][hapmap]
rs2372372	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2372437	1.00[CHB][hapmap]
rs2888298	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4128529	1.00[CHB][hapmap]
rs4462942	1.00[CHB][hapmap]
rs4510359	1.00[CHB][hapmap]
rs4586783	1.00[CHB][hapmap]
rs4682678	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4682679	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4682682	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4682685	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4682882	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4683366	1.00[JPT][hapmap]
rs6441772	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6441777	1.00[CHB][hapmap]
rs6770540	1.00[CHB][hapmap]
rs6783741	1.00[CHB][hapmap]
rs6791641	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6799364	1.00[CHB][hapmap]
rs6800983	1.00[CHB][hapmap]
rs6803929	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7621298	0.82[JPT][hapmap]
rs7623883	0.81[ASN][1000 genomes]
rs7628317	1.00[CHB][hapmap]
rs7649401	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9311339	1.00[CHB][hapmap]
rs9681394	0.82[JPT][hapmap]
rs977911	1.00[CHB][hapmap]
rs9834842	0.90[CEU][hapmap]
rs9836386	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9876172	0.83[YRI][hapmap]

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43373400-43393400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr3:43380800-43393200	Strong transcription	Cortex derived primary cultured neurospheres	brain
3	chr3:43381000-43393800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr3:43381000-43396400	Weak transcription	Stomach Mucosa	stomach
5	chr3:43382000-43393400	Strong transcription	Primary B cells from cord blood	blood
6	chr3:43382400-43395400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:43384200-43394000	Weak transcription	Fetal Heart	heart
8	chr3:43385200-43396800	Weak transcription	Ovary	ovary
9	chr3:43385800-43402000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr3:43387200-43394000	Weak transcription	Small Intestine	intestine
11	chr3:43387600-43402600	Weak transcription	Right Atrium	heart
12	chr3:43388600-43393200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr3:43388600-43393400	Strong transcription	Muscle Satellite Cultured Cells	--
14	chr3:43388800-43393200	Strong transcription	Fetal Lung	lung
15	chr3:43389200-43400800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr3:43390000-43393200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr3:43390000-43393200	Weak transcription	Psoas Muscle	Psoas
18	chr3:43390000-43393600	Weak transcription	Hela-S3	cervix
19	chr3:43390200-43393200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr3:43390600-43393200	Weak transcription	Brain Angular Gyrus	brain
21	chr3:43390600-43393400	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr3:43390600-43394400	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr3:43390600-43394400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr3:43390600-43394800	Weak transcription	Brain Cingulate Gyrus	brain
25	chr3:43390600-43403600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr3:43390600-43406600	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr3:43390600-43407200	Weak transcription	Gastric	stomach
28	chr3:43390800-43393400	Weak transcription	Brain Hippocampus Middle	brain
29	chr3:43390800-43394200	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr3:43390800-43402200	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr3:43390800-43405200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr3:43391000-43394200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr3:43391000-43395200	Weak transcription	Stomach Smooth Muscle	stomach
34	chr3:43391200-43393200	Strong transcription	Primary T helper cells fromperipheralblood	blood
35	chr3:43391200-43393400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr3:43391200-43394000	Weak transcription	HMEC	breast
37	chr3:43391400-43393200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr3:43391400-43394800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr3:43391400-43405400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr3:43391600-43393200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr3:43391600-43393400	Strong transcription	Primary T cells from cord blood	blood
42	chr3:43391600-43393400	Strong transcription	Primary T cells fromperipheralblood	blood
43	chr3:43391600-43393400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr3:43391600-43393400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr3:43391600-43393400	Strong transcription	Fetal Thymus	thymus
46	chr3:43391600-43393400	Strong transcription	Skeletal Muscle Female	skeletal muscle
47	chr3:43391600-43393800	Weak transcription	GM12878-XiMat	blood
48	chr3:43391600-43395200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr3:43391600-43395200	Weak transcription	Colon Smooth Muscle	Colon
50	chr3:43391600-43395200	Weak transcription	Fetal Intestine Small	intestine

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