Variant report

Variant	rs17075743
Chromosome Location	chr3:43537900-43537901
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:43537054..43539250-chr3:43539442..43541239,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10461014	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10865932	1.00[CHB][hapmap]
rs12634274	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs1384433	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1395372	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs1506617	0.80[ASN][1000 genomes]
rs1588027	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs17075597	1.00[CHB][hapmap];0.81[YRI][hapmap]
rs17075630	0.82[CHB][hapmap]
rs17075705	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs17075792	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17075814	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17075848	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2372437	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3755603	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3772170	0.88[EUR][1000 genomes]
rs4128529	1.00[CHB][hapmap];0.80[ASN][1000 genomes]
rs4395382	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4462942	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4510359	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4586783	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4630916	0.83[ASN][1000 genomes]
rs4682685	1.00[CHB][hapmap]
rs4682686	0.80[ASN][1000 genomes]
rs4682689	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4682882	1.00[CHB][hapmap]
rs4682887	0.80[ASN][1000 genomes]
rs4682893	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58731196	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6441772	1.00[CHB][hapmap]
rs6441777	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6770540	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6783741	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs6791641	1.00[CHB][hapmap]
rs6799364	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6800983	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs6803929	1.00[CHB][hapmap];0.82[YRI][hapmap]
rs7613972	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7628317	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7631398	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9311339	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs965928	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs977911	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs9832135	0.90[ASN][1000 genomes]
rs9863943	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9874278	1.00[CEU][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428738	chr3:43491435-43651168	Strong transcription Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43473400-43541400	Weak transcription	Aorta	Aorta
2	chr3:43497000-43539400	Weak transcription	HSMM	muscle
3	chr3:43504800-43553400	Weak transcription	Duodenum Mucosa	Duodenum
4	chr3:43519600-43539000	Weak transcription	Right Atrium	heart
5	chr3:43519800-43538200	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr3:43522200-43538200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:43522200-43538800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr3:43522400-43539600	Weak transcription	HSMMtube	muscle
9	chr3:43524200-43539600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr3:43526000-43560800	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr3:43526400-43538400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr3:43527000-43539000	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr3:43527200-43560200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr3:43531200-43539000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr3:43531200-43542600	Weak transcription	Psoas Muscle	Psoas
16	chr3:43532400-43540800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr3:43532600-43538200	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr3:43532600-43539000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr3:43532600-43540800	Weak transcription	Spleen	Spleen
20	chr3:43532800-43539000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr3:43533000-43538000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr3:43533000-43553000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr3:43533200-43538800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr3:43533200-43544800	Weak transcription	K562	blood
25	chr3:43533600-43539000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr3:43533800-43538400	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr3:43533800-43539800	Weak transcription	Primary T cells from cord blood	blood
28	chr3:43537200-43539000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr3:43537600-43538200	Enhancers	HUVEC	blood vessel

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