Variant report

Variant	rs10461014
Chromosome Location	chr3:43513263-43513264
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1384433	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17075743	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17075792	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17075814	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17075848	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2372437	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3755603	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3772170	0.88[EUR][1000 genomes]
rs4395382	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4462942	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4586783	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4682689	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4682893	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58731196	0.92[EUR][1000 genomes]
rs6441777	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6770540	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6799364	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7613972	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7628317	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7631398	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs965928	0.80[EUR][1000 genomes]
rs9832135	0.90[ASN][1000 genomes]
rs9863943	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9874278	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428738	chr3:43491435-43651168	Strong transcription Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43473400-43541400	Weak transcription	Aorta	Aorta
2	chr3:43497000-43514800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr3:43497000-43514800	Weak transcription	Gastric	stomach
4	chr3:43497000-43539400	Weak transcription	HSMM	muscle
5	chr3:43497200-43519600	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr3:43497200-43520000	Weak transcription	Stomach Smooth Muscle	stomach
7	chr3:43497200-43532600	Weak transcription	K562	blood
8	chr3:43503600-43514800	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr3:43504800-43514800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr3:43504800-43514800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr3:43504800-43553400	Weak transcription	Duodenum Mucosa	Duodenum
12	chr3:43505400-43518800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr3:43506600-43522800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr3:43508600-43521800	Weak transcription	HSMMtube	muscle
15	chr3:43509400-43517800	Weak transcription	Primary T cells from cord blood	blood
16	chr3:43509600-43517600	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr3:43509800-43518000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr3:43510000-43514200	Weak transcription	Adipose Nuclei	Adipose
19	chr3:43510000-43515000	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr3:43510000-43515200	Weak transcription	Brain Anterior Caudate	brain
21	chr3:43510000-43516600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr3:43510000-43517400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr3:43510000-43517800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr3:43510000-43519000	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr3:43510000-43521200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr3:43510000-43521600	Weak transcription	Brain Substantia Nigra	brain
27	chr3:43510200-43514200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr3:43510200-43514800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr3:43510200-43517400	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr3:43510800-43519200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr3:43511400-43513600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr3:43511800-43514800	Weak transcription	Brain Cingulate Gyrus	brain
33	chr3:43512400-43517800	Weak transcription	Primary T cells fromperipheralblood	blood
34	chr3:43513000-43514800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr3:43513000-43524600	Weak transcription	Psoas Muscle	Psoas

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