Variant report

Variant	rs4682686
Chromosome Location	chr3:43457199-43457200
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12634274	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1384433	0.80[ASN][1000 genomes]
rs1395372	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1506617	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1588027	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17075630	0.82[EUR][1000 genomes]
rs17075705	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17075743	0.80[ASN][1000 genomes]
rs17075792	0.80[ASN][1000 genomes]
rs2372437	0.80[ASN][1000 genomes]
rs4128529	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4395382	0.80[ASN][1000 genomes]
rs4462942	0.80[ASN][1000 genomes]
rs4510359	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4586783	0.80[ASN][1000 genomes]
rs4630916	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4682685	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4682887	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6441772	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6441777	0.80[ASN][1000 genomes]
rs6783741	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6799364	0.80[ASN][1000 genomes]
rs6800983	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7623883	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7628317	0.80[ASN][1000 genomes]
rs7631398	0.80[ASN][1000 genomes]
rs9311339	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs977911	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9863943	0.80[ASN][1000 genomes]

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43430000-43460200	Weak transcription	Aorta	Aorta
2	chr3:43432000-43460200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr3:43432000-43477800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr3:43433400-43458800	Weak transcription	Pancreas	Pancrea
5	chr3:43436400-43475800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr3:43440800-43464400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr3:43442400-43460200	Weak transcription	Fetal Muscle Leg	muscle
8	chr3:43442600-43460200	Weak transcription	Adipose Nuclei	Adipose
9	chr3:43443000-43495600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr3:43443400-43465800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr3:43447000-43465800	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr3:43447800-43460400	Weak transcription	Left Ventricle	heart
13	chr3:43447800-43481200	Weak transcription	Lung	lung
14	chr3:43448200-43464800	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr3:43448200-43464800	Weak transcription	Osteobl	bone
16	chr3:43448400-43460200	Weak transcription	HSMM	muscle
17	chr3:43449000-43473000	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr3:43449000-43474400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr3:43449200-43465600	Weak transcription	HMEC	breast
20	chr3:43449600-43460000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr3:43449600-43462600	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr3:43451000-43459400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr3:43451000-43459400	Weak transcription	Fetal Intestine Small	intestine
24	chr3:43451000-43460200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr3:43451000-43473000	Weak transcription	Duodenum Mucosa	Duodenum
26	chr3:43453600-43467000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr3:43453800-43460600	Weak transcription	Brain Angular Gyrus	brain
28	chr3:43454000-43457600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr3:43454000-43460200	Weak transcription	Fetal Lung	lung
30	chr3:43454200-43460200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr3:43454800-43459000	Weak transcription	Thymus	Thymus
32	chr3:43455200-43460400	Weak transcription	Right Atrium	heart
33	chr3:43455600-43460400	Weak transcription	Right Ventricle	heart
34	chr3:43455600-43460400	Weak transcription	Stomach Smooth Muscle	stomach
35	chr3:43455600-43464000	Weak transcription	Psoas Muscle	Psoas
36	chr3:43455600-43475400	Weak transcription	Fetal Muscle Trunk	muscle
37	chr3:43455600-43484400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr3:43455800-43460400	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr3:43455800-43460600	Weak transcription	Brain Hippocampus Middle	brain
40	chr3:43455800-43465800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr3:43455800-43473000	Weak transcription	Fetal Stomach	stomach
42	chr3:43455800-43473600	Weak transcription	Brain Anterior Caudate	brain
43	chr3:43455800-43477200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr3:43456400-43459800	Weak transcription	HepG2	liver
45	chr3:43456600-43459800	Weak transcription	HUVEC	blood vessel
46	chr3:43456600-43467200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr3:43457000-43492800	Weak transcription	K562	blood

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