Variant report

Variant	rs9858322
Chromosome Location	chr3:56839432-56839433
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:56839184..56841746-chr3:56860338..56862869,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12638861	0.82[EUR][1000 genomes]
rs17057328	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs60290840	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73833731	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876818	chr3:56805376-56924711	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56836000-56840200	Weak transcription	Fetal Heart	heart
2	chr3:56836400-56845800	Weak transcription	Lung	lung
3	chr3:56836600-56839600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr3:56836600-56840200	Weak transcription	Rectal Smooth Muscle	rectum
5	chr3:56836600-56845200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr3:56836800-56840200	Weak transcription	Left Ventricle	heart
7	chr3:56836800-56840200	Weak transcription	Right Ventricle	heart
8	chr3:56836800-56844400	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr3:56836800-56844600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr3:56836800-56845000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr3:56836800-56845400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr3:56836800-56846000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr3:56836800-56846800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr3:56837000-56844000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr3:56837000-56844200	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr3:56837000-56844200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr3:56837000-56844600	Weak transcription	Primary T cells from cord blood	blood
18	chr3:56837000-56844800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr3:56837200-56844000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr3:56837200-56844200	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr3:56838200-56841000	Enhancers	Brain Hippocampus Middle	brain
22	chr3:56838200-56841000	Enhancers	Brain Substantia Nigra	brain
23	chr3:56838400-56840200	Enhancers	Placenta Amnion	Placenta Amnion
24	chr3:56838400-56840800	Enhancers	Brain Cingulate Gyrus	brain
25	chr3:56838400-56840800	Enhancers	Colon Smooth Muscle	Colon
26	chr3:56838400-56841400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr3:56838600-56840200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr3:56838600-56841000	Enhancers	Brain Anterior Caudate	brain
29	chr3:56838600-56841000	Enhancers	Fetal Muscle Leg	muscle
30	chr3:56838600-56841000	Enhancers	Placenta	Placenta
31	chr3:56838800-56839800	Enhancers	Fetal Kidney	kidney
32	chr3:56838800-56840800	Enhancers	Brain Angular Gyrus	brain
33	chr3:56838800-56841000	Enhancers	Fetal Brain Female	brain
34	chr3:56838800-56841200	Enhancers	Fetal Muscle Trunk	muscle
35	chr3:56839000-56841000	Enhancers	Fetal Stomach	stomach
36	chr3:56839200-56839600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr3:56839200-56839800	Weak transcription	Brain Germinal Matrix	brain
38	chr3:56839200-56840200	Weak transcription	Esophagus	oesophagus
39	chr3:56839200-56841000	Enhancers	Fetal Brain Male	brain
40	chr3:56839200-56841200	Enhancers	Cortex derived primary cultured neurospheres	brain
41	chr3:56839200-56845000	Weak transcription	Fetal Thymus	thymus
42	chr3:56839200-56845000	Weak transcription	HepG2	liver
43	chr3:56839400-56839800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr3:56839400-56841000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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