Variant report

Variant	rs12638861
Chromosome Location	chr3:56843028-56843029
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:56726200..56728005-chr3:56842796..56845095,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12632965	0.81[ASN][1000 genomes]
rs17057334	0.88[CEU][hapmap]
rs17216789	0.95[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];0.99[ASN][1000 genomes]
rs17235719	0.87[CEU][hapmap]
rs9858322	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876818	chr3:56805376-56924711	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56836400-56845800	Weak transcription	Lung	lung
2	chr3:56836600-56845200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr3:56836800-56844400	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr3:56836800-56844600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr3:56836800-56845000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr3:56836800-56845400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr3:56836800-56846000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr3:56836800-56846800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr3:56837000-56844000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr3:56837000-56844200	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr3:56837000-56844200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr3:56837000-56844600	Weak transcription	Primary T cells from cord blood	blood
13	chr3:56837000-56844800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr3:56837200-56844000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr3:56837200-56844200	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr3:56839200-56845000	Weak transcription	Fetal Thymus	thymus
17	chr3:56839200-56845000	Weak transcription	HepG2	liver
18	chr3:56839800-56845600	Weak transcription	Fetal Kidney	kidney
19	chr3:56840800-56844400	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr3:56840800-56844800	Weak transcription	Colon Smooth Muscle	Colon
21	chr3:56840800-56845600	Weak transcription	Brain Angular Gyrus	brain
22	chr3:56840800-56845800	Weak transcription	Esophagus	oesophagus
23	chr3:56840800-56845800	Weak transcription	Fetal Heart	heart
24	chr3:56840800-56847800	Weak transcription	Right Ventricle	heart
25	chr3:56840800-56861000	Weak transcription	Left Ventricle	heart
26	chr3:56841000-56844800	Weak transcription	Fetal Brain Male	brain
27	chr3:56841000-56845000	Weak transcription	Fetal Muscle Leg	muscle
28	chr3:56841000-56847000	Weak transcription	Brain Hippocampus Middle	brain
29	chr3:56841000-56847200	Weak transcription	Brain Substantia Nigra	brain
30	chr3:56841600-56845800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr3:56841600-56845800	Weak transcription	Fetal Brain Female	brain
32	chr3:56842800-56843200	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr3:56843000-56844200	Weak transcription	Placenta	Placenta

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